Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq108602 100 2e-16 seq19544 95.1 1e-14 seq97248 89.7 4e-13 >seq108602 Length=371 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| || || || || ||||||||||| ||| | || || | | Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAA-CAAT 290 Query 115345 C-GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||||| | | |||| || || || ||| |||||||| || | || || Sbjct 289 CTGACACCATCG-ACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGAC 231 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || |||||||| | ||| || |||||||||||||| | | ||| | | |||||| Sbjct 230 CAACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTAT 171 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||||||||| |||||| | ||| |||| | ||| | |||||||| Sbjct 170 AACATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGGA 120 >seq19544 Length=280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| || ||||| || || | || ||||| ||||||||| | || || | Sbjct 280 AAATATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGA--CGTCGAA 223 Query 115342 CAG--CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 || ||| ||| ||| | ||||| || ||| ||||| ||||| |||| Sbjct 222 CAATCCGATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCA 163 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||| |||||| | || | ||| || || ||||||||||||| | |||| | | ||| Sbjct 162 GATCAACAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGAT 103 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || || || || ||||| ||| | ||| |||| | ||| | ||||||||| Sbjct 102 TACAATATCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTAGAGGAGGAA 48 >seq97248 Length=461 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| |||||||| || || || || | || || || || |||||| | || ||| | Sbjct 179 AAATATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAG-C 237 Query 115342 CAGC-GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 | | || ||| ||| |||| || || || ||| || ||||||||| |||| Sbjct 238 AATCAGATACTATTG-ACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCACCA 296 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||| || ||| | || | || || || ||||||||||||| | ||| | | ||| Sbjct 297 GATCAACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGAT 356 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || |||||||| |||||||| ||| | ||| |||| | ||| | ||||||||| Sbjct 357 TACAACATTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGAGGAA 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424778169130240