Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq48149 82.4 2e-11 seq88652 80.6 7e-11 >seq48149 Length=216 Score = 82.4 bits (90), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27929 CACGATATGCGCCGTACAGCCAGTACGTTGTTGCATGAGGCTGGTTATCCTTCAGACTGG 27988 ||||| ||||||| || || |||||| | | |||||||||||||| | || ||| Sbjct 124 CACGACTTGCGCCGCACTGCTAGTACGCTACTTCATGAGGCTGGTTACAACACTGATTGG 65 Query 27989 ATTGAAAAGGCTCTGGCACATGAGCAGAAAGGTGTGCGCGCCGTATATAACAAAGCGGAA 28048 ||||| ||| || || ||||||||||| || ||| | || || || || ||||| ||| Sbjct 64 ATTGAGAAGTGCCTTGCTCATGAGCAGAAGGGCGTGAGGGCTGTCTACAATAAAGCTGAA 5 Query 28049 TAC 28051 ||| Sbjct 4 TAC 2 >seq88652 Length=648 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2864 GCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 2922 |||||||||||||||||||||| | ||||||||||| | |||||| |||| |||||||| Sbjct 487 GCAGGATTCGAACCTGCGACCATCAGCTTAGAAGGCTGGTGCTCTATCCAGCTGAGCTA 545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124849162982784