Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_007809.1 Length=59446 Score E Sequences producing significant alignments: (Bits) Value seq1104 105 3e-18 >seq1104 Length=359 Score = 105 bits (116), Expect = 3e-18 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 35601 CGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGT 35660 |||||||| |||||| || |||||||| | |||| | | || || || ||||| Sbjct 53 CGCCCGGGATCTGTGGAACCGGATCATGCAGGCAACCTTTGCCTATGCCGAACCCGGCGT 112 Query 35661 GCTGTTCATCGACGCGATCAACCGCATG-AACAACCTCTGGTACTGCGAGACCATCGCCG 35719 | || || ||| ||||| || | |||||||| | |||||||| ||||| || Sbjct 113 AATTTTTATTGACCGCATCAAT-GCGCGCAACAACCTGTCTTACTGCGAAACCATTCACG 171 Query 35720 CCACGAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCT 35779 |||| || || |||||||| || ||||| |||||||||||||||||| || | || ||| Sbjct 172 CCACCAATCCGTGCGGTGAACAGCCGCTGCCGCCCTACGGTGCCTGCCTGCTCGGTTCCA 231 Query 35780 TCAACCT 35786 |||| || Sbjct 232 TCAATCT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189859188923392