Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq108602 91.5 1e-13 >seq108602 Length=371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || || || |||| ||| || || || || ||||| ||||| || || | Sbjct 121 CCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGAT 180 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || |||||||| || ||| | ||||| | ||||||||| || Sbjct 181 AGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGA 240 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||| || ||| | ||| || | | | | ||||| | || Sbjct 241 ATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACA 300 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||||||||| || || || || ||||| ||||||||| Sbjct 301 TCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404549115484480