Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq97248 123 2e-23 seq19544 118 7e-22 seq8388 104 2e-17 seq77926 91.5 1e-13 seq108602 84.2 1e-11 seq106932 82.4 5e-11 >seq97248 Length=461 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||||||| ||| || ||||| ||||||||||| || | | | || ||| Sbjct 391 ACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGATAATGTTCTTCCATCTTCT 332 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| ||||| || || || | | |||||||| | |||| |||||||||||| | Sbjct 331 AATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGA 272 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | | ||||||| ||||| ||||| ||||| || ||| Sbjct 271 ATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACATCTAAGGTAATTGTCTTA 212 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || || || || ||||| || ||||| ||| Sbjct 211 CCAGTTAAAGTCTTTACGAAGATTTGCATATTT 179 >seq19544 Length=280 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||||||| |||||| || |||||||||||||| || | | | || ||| Sbjct 68 ACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGATAAGGTTCTTCCATCTTCT 127 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| ||||| ||||| || | | ||||||||| | |||| ||||| || || | Sbjct 128 AATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATACCTTCCTTATCTTGA 187 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||| | | |||||| ||| || || | ||||| || || Sbjct 188 ATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGACGTCAAGGGTAATGGTCTTT 247 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || |||||||| || || || |||||||| ||| Sbjct 248 CCAGTCAAGGTCTTTACAAAGATCTGCATATTT 280 >seq8388 Length=321 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 156 CTCTCTCTTCAGAGGGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 215 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 216 GCAAATATTTAGCTTTA 232 >seq77926 Length=1131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 |||| |||||||||| ||||||||||||||||| |||||||||||||||| | | | || Sbjct 575 TTCAGGGTTCTTTTCACCTTTCCCTCACGGTACTCGTTCGCTATCGGTCTCTCAGGAGTA 516 Query 20014 TTTAGCCTTA 20023 |||||||||| Sbjct 515 TTTAGCCTTA 506 >seq108602 Length=371 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| ||||| || |||||||| || ||||| || | | | |||| ||| Sbjct 139 ACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGTTCTACCGTCTTCT 198 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||||||||| ||||| || || | ||||| || | || | || ||||| || | Sbjct 199 AATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCCCTCTTTATCTTGA 258 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||| | || || || |||||| ||||| || || ||||| Sbjct 259 ATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACATCTAAGGTGATGGTTTTT 318 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || || |||||||| Sbjct 319 CCAGTAAGAGTCTTAACAAAGATCTGCAT 347 >seq106932 Length=382 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| ||||||||||||| |||||||||| | || |||| Sbjct 239 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATGGTAGATAGGGACAGTAGGAACCTCGA 180 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || | ||||||| ||||| || ||| ||||||| Sbjct 179 AAACCAATTCATGCACGTCATTAGTTATATGACGA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334501623089312