Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq83019 159 2e-34 >seq83019 Length=855 Score = 159 bits (176), Expect = 2e-34 Identities = 317/462 (69%), Gaps = 23/462 (5%) Strand=Plus/Minus Query 65705 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 65764 ||| ||||||| ||||| ||| || |||||| |||||||| ||||||||||| ||||| Sbjct 728 GTCATTGACTCCGTGGCTGCCTTGACGCCGCGTGCCGAGCTTGAAGGCGACATGGGGGAT 669 Query 65765 AGTCACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCA 65822 |||| | |||||||| || ||||| ||| ||||| |||||||||| || || Sbjct 668 --TCACTGCCGGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTTACCGGTT 611 Query 65823 CCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 65879 | || |||| ||| | || | ||| ||| |||||||| | ||| |||||||| Sbjct 610 CGATTTCCAAGACCCATTGCATGGTGA---TCTTCATCAACCAGATCCGCATGAAGATCG 554 Query 65880 GCAACGTGGGCTACGGCCCGAAC---GAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 65936 || | || | |||| ||| || || || ||||||||||| || ||| |||| Sbjct 553 GCGTCATG---TTCGGC---AACCCTGAAACAACAACGGGCGGCAATGCGCTGAAATTCT 500 Query 65937 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 65996 | | || || || | || | || ||||||| | | ||||| | || || | | Sbjct 499 ATTCGTCGGTGCGTCTCGACATTCGCCGCATCGGCGCGATCAAGGATCGTGACGAAGTGG 440 Query 65997 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACG 66056 | || |||| ||||| || ||||| || ||||||||| | || ||||| |||| | | Sbjct 439 TGGGTAACCAGACCCGCGTAAAGGTGGTGAAGAACAAGGTTGCACCGCCATTCCGCCAGG 380 Query 66057 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 66116 |||||| || |||| || ||||| || || | | || | |||||||| | Sbjct 379 TTGAGTTCGATATCATGTATGGTGAGGGTATTTCCAAGGTTGGAGAGTTGCTCGACCTTG 320 Query 66117 CCGTGTCGCAG--GGCCTGGTGAAGAAGTCGGGCGCCTGGTT 66156 ||||| | | ||| | || | ||||||||| ||||||| Sbjct 319 --GTGTCACCGGTGGCATTGTTGAAAAGTCGGGCTCCTGGTT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237903897251968