Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq108602 145 7e-30 seq97248 120 3e-22 seq19544 102 7e-17 seq44811 96.9 3e-15 seq87644 86.0 5e-12 seq94139 84.2 2e-11 >seq108602 Length=371 Score = 145 bits (160), Expect = 7e-30 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || || ||| ||||||| | || || || || Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATC 289 Query 25058 TGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| ||||| || || ||| | || | ||| || ||||| || |||||||| || Sbjct 288 TGACACCATCGA--CAATGTCAAGACTAAGATTCAA-GATAAAGAGGGAATTCCACCAGA 232 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | |||| ||||| || |||||||||||||| | | | ||| | ||||| Sbjct 231 CCAACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTA 172 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || |||||||||||||| || || ||||| || || || || ||||||||| Sbjct 171 TAACATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGGA 120 >seq97248 Length=461 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||||||||| || ||||| | || || | || || ||| || Sbjct 183 ATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGCAATCA 242 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | || | ||| ||||||||||| || ||||| || || Sbjct 243 GATACTATTGACAACGTCAAGACTAAGATTCAA-GACAAAGAAGGCATCCCACCAGATCA 301 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || || || || || ||||||||||||| | || | |||||||| Sbjct 302 ACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTACAA 361 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| ||||| ||||| || ||||| || || || || |||||||||| Sbjct 362 CATTCAGAAAGAGTCCACTCTTCATTTGGTCCTTAGACTCAGAGGAGGAA 411 >seq19544 Length=280 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| ||||| || || |||| || | || || || || Sbjct 276 ATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAATCC 217 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | || | ||| || || ||||| || ||||| || || Sbjct 216 GATACTATTGATAATGTAAAGACTAAGATTCAA-GATAAGGAAGGTATCCCACCAGATCA 158 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||| || || ||||||||||||| | || | |||||||| Sbjct 157 ACAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTACAA 98 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || || || ||||| || ||||| || || || || |||||||||| Sbjct 97 TATCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTAGAGGAGGAA 48 >seq44811 Length=222 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| |||||||| || ||||| | |||| ||||| || || ||||| ||| Sbjct 180 GACAAAGAAGGAATTCCACCAGATCAACAAAGACTTATCTTTGCTGGAAAGCAATTGGAA 121 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | | | ||| | ||| ||||| ||||| || ||||| || || || || || || Sbjct 120 GACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGAATCTACTCTCCACTTGGTCCTC 61 Query 25212 AGGCTAAGAGGAGGAA 25227 || || |||||||||| Sbjct 60 AGACTTAGAGGAGGAA 45 >seq87644 Length=678 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 |||| ||| || |||||||| ||||| || || ||||| | | || |||||||| || Sbjct 234 AAAATTCAA-GATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAA 292 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||||| | || | || ||||||||||| |||||||| || || || Sbjct 293 GCAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCA 352 Query 25202 TTTAGTGCTAAGGCTAAGAGGAGG 25225 | | || || || ||||||| || Sbjct 353 TCTCGTCCTCAGATTAAGAGGTGG 376 >seq94139 Length=510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/223 (70%), Gaps = 11/223 (5%) Strand=Plus/Minus Query 24978 TAATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATC 25037 |||||| |||| | | || ||||||| |||||||||| ||| | || |||||| | ||| Sbjct 362 TAATTTAAACAATAAGCAA-AATGCAAGTATTTGTAAAAACTCTAACAGGTAAAACTATC 304 Query 25038 ACAGTCGAAGTGGAGTCGTCTGACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAA 25096 |||||||| || || || |||| || || |||| |||| ||| || || Sbjct 303 ACAGTCGATGTTGAACACAACGAATCTATTGATAACATCAAAGCCAAAATTCA-GGAAAA 245 Query 25097 AGAAGGGATTCCACCTGA---CCAACAGCGGATTA-TTTTTGCCGGCAAACAATTAGAAG 25152 ||||| || ||| |||| |||| ||||| |||||| || || ||||| |||| Sbjct 244 GGAAGGTATCCCAGCTGATAGCCAA----AGATTAGTTTTTGGTGGAAAGCAATTGGAAG 189 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 ||| | || | | |||||||||||| |||||| || || Sbjct 188 ATGGAAGAACAGCTGCAGATTACAATATTAGAAAAGAGTCTAC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432751548094880