Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq65192 93.3 5e-14 seq60251 84.2 2e-11 >seq65192 Length=2464 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||||||||||||||| || ||||||||| || |||||||||||||||||||||| Sbjct 2287 GTAGCTCAGCTGGATAGAGCACCTCCCTTCTAAGGAGGCGGTCACAGGTTCGAATCCTGT 2228 Query 162328 C 162328 | Sbjct 2227 C 2227 >seq60251 Length=5058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 |||||||| |||||||||||||| ||||||||||| || ||| |||||||||| |||||| Sbjct 2274 GTAGCTCAACTGGATAGAGCAACAGCCTTCTAAGCCGTAGGTTACAGGTTCGAGTCCTGT 2215 Query 162328 C 162328 | Sbjct 2214 C 2214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566458068659200