Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq59922 352 3e-92 seq75063 230 3e-55 seq14334 96.9 4e-15 >seq59922 Length=6033 Score = 352 bits (390), Expect = 3e-92 Identities = 630/905 (70%), Gaps = 26/905 (3%) Strand=Plus/Minus Query 92785 TTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTT 92844 || |||| ||| ||| |||||||||||| |||||| | ||||||||||| || || || Sbjct 1165 TTGTTCAAAACTCCAGCTTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTC 1106 Query 92845 CCTTCCAAAGATATCGAATTCACT---AGTGATTGGATTCTTGGCGTTATAATACTTTTC 92901 |||| | || ||| | ||| | | | ||| || | ||||| ||||||||| Sbjct 1105 CCTTGAATTGAAATC-ATTTCCATGAAATCAAATGGGTTTGTCGCGTTG-AATACTTTTT 1048 Query 92902 ACCGATC--AACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAA 92959 | || || || |||||||||||||||| ||||| || ||||| || ||||||||| Sbjct 1047 -CGTTTCCTAATTCCAACAATAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAA 989 Query 92960 TCACAATTCATTCCTAGAAGACGTA-CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGAT 93018 |||| |||||||| | | || || | || || || || | || |||||||| || Sbjct 988 TCACTGTTCATTCCGATTA-ACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAAT 930 Query 93019 TACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATA 93078 | |||| || || | |||| ||| | ||||| |||| | |||| | Sbjct 929 TTCAACTGCGTCAAGGATAATTTTCTGAACTGTTTCCTTTGGAAGTTTATCAACGATGTG 870 Query 93079 ATTG---TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTC 93135 ||| || | ||| || || || || || || |||||||||| ||| || ||||| Sbjct 869 GTTGGTGTATAATAAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTC 810 Query 93136 ATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAA 93195 || ||| | | ||||| | |||||||| |||||| | ||| | |||||| || Sbjct 809 GTTAGAGAAAGAAAGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAA 750 Query 93196 ACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT 93255 | ||| || || || || |||||||| ||||||||||| |||| | ||| ||||| Sbjct 749 AGAACCTGAGAAGAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAATGA 690 Query 93256 TGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAG 93315 | | || | ||||| ||||||||||| |||||| ||||| ||| | Sbjct 689 TCCTTCATCA------ATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCAT 636 Query 93316 TGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 ||| || ||||| ||||| | || ||| || | || ||| ||||| ||||| || Sbjct 635 TGTGTCAATAGCATTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTAT 576 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 ||| || |||||| ||||||| || | || || | ||| | |||||| ||||||||| | Sbjct 575 TAAAAGCGAATACGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAA 516 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTA 93494 | | || || || ||| ||||| ||| || || ||||| | | |||||||| || | Sbjct 515 TTTTGCCTCAGTATACTGAACTTC-TGACAAGAAATTCTCTGCTAAGTTTTCATTTACAA 457 Query 93495 TACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTT 93554 | ||||| ||||| || ||||||||||||| ||| || | |||||| |||| ||| | Sbjct 456 TTCCATCTGATGCCGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGT 397 Query 93555 TAAGCT---TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCA-A 93610 | |||| |||||||||| || || | |||||| | |||||| | ||||| | Sbjct 396 TCAGCTTCGTATCCCAATCAATTAAGTCGGCTTGAAGATCAATCTCTTCGGCTGTCCAGA 337 Query 93611 AACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 ||| | ||||| || |||||||| | | |||| ||||| | | |||||||||||||| Sbjct 336 AACTA-GCTTCGGCCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGA 278 Query 93671 ACAAA 93675 ||||| Sbjct 277 ACAAA 273 >seq75063 Length=1318 Score = 230 bits (254), Expect = 3e-55 Identities = 620/930 (67%), Gaps = 24/930 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||| || |||||| || || | |||||| |||| |||||||| || ||||||| Sbjct 101 CATAACCCCTGCTTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTTCCTTG 160 Query 92850 CAAAGATATCGAATTCA-CTAGT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | || ||| | || | | | || |||||| || || | | |||| | | Sbjct 161 AAGTGAAATCATGTCCATCCATTCGAATGGATTAACTGCATTGAAGTGCTTTGGTAC--T 218 Query 92908 CAACTCGTACA-ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | | ||| | | || ||||||||| ||||| || || || || ||| | | | | Sbjct 219 CCAAGAGTAAAGAGAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTTGCTA 278 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 ||||| || | ||| ||| || | || || | | || || ||| ||| | || Sbjct 279 TTCATACCAATAAGTTCTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGCTACT 338 Query 93026 GCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTAC 93085 ||||| |||| ||||| | ||| ||||| | || | || | || || ||| Sbjct 339 GCTTCAGTCAAAATTTCATAAATTCTTTCATTTGATACCTTATTAACCATATGTTTATAC 398 Query 93086 ATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAAT 93145 | || || |||||||| |||||||| || || |||| ||| ||||||||||| ||| Sbjct 399 AACAAACAAGCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACTCATTAGAGAAA 458 Query 93146 GTTAAACCTGG--TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC-A 93202 | ||||| ||| || ||| ||| | | ||| || |||| |||||| ||| | Sbjct 459 CAAAGGCCTGGCATAAGAGATCTCTTTT--TCAACCAGAAAATTGC-GCAAAAAGACCCA 515 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCA-CAATACGTTCGGCAAAATTTGCGGA 93261 || || || || ||||| || ||||| || | |||| | ||| ||||| || | Sbjct 516 GAGAAGAAAATTCCTTCTACACAAGCAAACGCAATCAAT-CTTTCAGCAAA---TGAGTC 571 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT-AGTGTT- 93319 ||| | | |||||||| |||||||| || || || ||||||| || | | | || Sbjct 572 ATTCTTATTAATCCATTTAAAAGCCCAGTCAGCCTTCTTCTTAA--CAGTTTCAATATTA 629 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 || ||||| ||||| ||| ||||| || | ||| | || || ||||| || | Sbjct 630 TCAATAGCCTTAAAAAGGAAATCTTTTTCTTTGAGATCACTAATATAAGTATCAATAAGG 689 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||||| || ||||| || ||||||||||| | ||||||| || ||||| |||||| Sbjct 690 AGAGAGTAAGTTTCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGCATCTA 749 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 |||| | ||| || ||||| || || | || | ||||| ||| ||| || ||| Sbjct 750 ACTTCAGGGATTTGTACTTCAGCAGCGAAGCATTCAATAAGATTCTCAAGGACAATTCCA 809 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 || || || || || ||||| | | | || || || ||| |||||||||| || | Sbjct 810 TCAGAAGCAGCGAAGAAAGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCATTTAAT 869 Query 93560 TTATC---CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 ||||| |||||| || |||| | | ||| | ||||| | |||||| || Sbjct 870 TTATCATTCCAATCTTTTAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAAAAGCAT 929 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 |||| | ||||||||||| ||||| | ||| || ||||| ||||| || | || || Sbjct 930 GCTTGTTGCTTTTTGTACATTTCCCAAACGTCGTGGTATTGGATTGGGAAAAGAACGAAT 989 Query 93677 CGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 | | |||||| || | ||||| |||||| Sbjct 990 CTGTGAGGGTTCTCCATGAGTAAAGGCTCT 1019 >seq14334 Length=297 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 93479 AGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAA 93538 ||||||||||| || |||||||| ||||| ||||| || || | ||||| ||||| ||| Sbjct 60 AGATTTTCATTCACAATACCATCAGATGCAGCAAAGAACGCTAGAATATGTTTTATGAAA 119 Query 93539 TGTTTCTCATCATCTTTAAGCTTAT---CCCAATCGGATAGATCTTTTGAAAGATCGACT 93595 | ||||| || | ||| | |||||| ||||| | || || | | Sbjct 120 TAACGTTCATCGCTATTCAACTTGTTGGTCCAATCATTAAGATCCGTGTGCAGGTCTATT 179 Query 93596 TCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATAT 93655 ||||| |||||||||| || || |||||||||| |||||| | || || | | Sbjct 180 TCTTCAGCAGTCCAAAAACTAGCCTCACATTTTTTGTACCAATCCCACAAATCATGGTGT 239 Query 93656 TGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTA 93707 | || || || || ||||| || ||| |||| ||||| || | |||||||| Sbjct 240 TTGATAGGGAAAATAACAAATCGGTTAAGGTTTTCTTTCAGAATCGGCTCTA 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556101019124480