Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008584.1 Length=152372 Score E Sequences producing significant alignments: (Bits) Value seq103135 84.2 2e-11 >seq103135 Length=413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 12469 TTCATCAAGATTTACACCAAGAGTTTCAGCCCAAATCGGATCAAAAGAGTTTTCGGCATC 12528 ||||| || ||| ||||| | ||||||| ||| ||||||| | | ||| ||||| Sbjct 197 TTCATTAATATTCACACCTAATTTTTCAGCATAAACAGGATCAAGTGCATGTTCTGCATC 256 Query 12529 AATAAAAGCACATATTTTAT--TCGCTTTTTGCATTTGAGAAATAGTTATTAGGCTAAAA 12586 |||||||||||| | ||||| | | || ||| | || |||| | ||| ||| | Sbjct 257 AATAAAAGCACACACTTTATTATTACGTTGTGC--CTCAGCAATAACTTCTAGAGTAAGA 314 Query 12587 GTAGTTTTACCAGAAGACTCTTGACCGTATACTTCAATAATTTTTCCCATCGGAATTCCA 12646 || ||||||||| || || |||| || ||||||| || | | ||||| || | ||| Sbjct 315 GTCGTTTTACCACTTGATTCAGGACCATAAACTTCAACAACTCTGCCCATAGGTAAACCA 374 Query 12647 CCAATTCCTAGCGCCAAATCTA 12668 ||| |||| || | ||||| Sbjct 375 CCAGCACCTAAGGCTATATCTA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486797306301440