Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq108602 116 3e-21 seq97248 98.7 8e-16 seq87644 86.0 5e-12 seq44811 82.4 6e-11 >seq108602 Length=371 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| ||| | || || ||||| |||| | || || ||| | Sbjct 347 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATCT 288 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || |||||||| || ||||| |||||||| || ||| Sbjct 287 GACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCAA 228 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || ||||| ||||| || | || | || ||||| ||| Sbjct 227 CAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAAC 168 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||||||||| || | ||||| || Sbjct 167 ATTCAAAAAGAATCTACTCTCCATTTGGT 139 >seq97248 Length=461 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA--A 22272 ||| |||||||| || || || |||||||| ||||| || | || | || || || | Sbjct 179 AAATATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACAATTACCTTAGATGTTGAGCA 238 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | || ||||| | ||| | |||| || ||||||||||| || || || ||||| Sbjct 239 ATCA--GATACTATTGACAACGTCAAGACTAAGATTCAAGACAAAGAAGGCATCCCACCA 296 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 |||||||| | | || || || || || || ||||| ||| | || | || ||| Sbjct 297 GATCAACAGAGATTGATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGAT 356 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||||||| ||||| ||||| | ||||| || Sbjct 357 TACAACATTCAGAAAGAGTCCACTCTTCATTTGGT 391 >seq87644 Length=678 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||| || || || ||||| || ||||||||| | | || |||||||| || Sbjct 234 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAG 293 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || ||||| ||| | ||| | || || ||||| ||||| |||||||| ||| | ||| Sbjct 294 CAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCAT 353 >seq44811 Length=222 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||| || || |||||||| ||||||||| | ||||| ||||| || || Sbjct 189 AAGATTCAGGACAAAGAAGGAATTCCACCAGATCAACAAAGACTTATCTTTGCTGGAAAG 130 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || || || || | || ||||||| ||||||||||| || ||||| || Sbjct 129 CAATTGGAAGACGGTAGAACTCTCTCCGACTACAACATTCAGAAGGAATCTAC 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419169640038880