Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq89819 87.8 4e-12 seq60879 84.2 4e-11 >seq89819 Length=605 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| | Sbjct 220 GCCCGTCTAGCTCAGA-GGTAGAGCGCTAGACTTTTAATCTAGTGGTCGTGGGTTCGATC 278 Query 142564 CCCAC 142568 ||||| Sbjct 279 CCCAC 283 >seq60879 Length=4195 Score = 84.2 bits (92), Expect = 4e-11 Identities = 166/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 218611 AAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTT 218670 |||||||||||||| || ||| | || || | |||||||| || ||||| || Sbjct 2171 AAGATCCTCTTTGCTTGCTTTAAGAGAAATCTTAAAAATGAAATTAAAGTAGCTCAATTA 2230 Query 218671 TCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAG--GGTG 218728 || || |||||| | || | || | || ||||| || |||| | ||| || || Sbjct 2231 TCAGGATATGTAGCAGAGAAATCAGCTTATCATCATGGAGAGC--AATCTTTAGCTAGTA 2288 Query 218729 CCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA 218788 | ||||| || |||||||| || ||| || || || || || | | | ||| | Sbjct 2289 CTATTGTTGGAATGGCACAAAGCTTTGTTGGAAGCAATAATATTAGTGTTTTAGACCCTA 2348 Query 218789 ACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCT 218848 | || ||||| ||||| | | |||||||||| ||| |||||| || |||||||| | Sbjct 2349 AAGGGCAGTTCGGTTCGAGATCAATGGGTGGAAAAGATGCTGCTTCAGCAAGGTATATTT 2408 Query 218849 TTAC 218852 ||| Sbjct 2409 ATAC 2412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026399359956832