Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq59179 215 9e-51 seq108602 183 6e-41 seq59582 172 1e-37 seq97248 161 2e-34 seq19544 156 8e-33 seq25765 152 9e-32 seq44811 129 1e-24 seq11290 111 3e-19 seq87644 89.7 9e-13 >seq59179 Length=18447 Score = 215 bits (238), Expect = 9e-51 Identities = 385/559 (69%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 268181 TTGACAAAATCCTTGACAGAATACTGGACCCCAGTTGCAATCACAAAGTCCTCTGGCTCA 268240 || |||||||| || |||||||| || || || ||||| ||||| || || || || Sbjct 16389 TTAACAAAATCACGAACGGAATACTGCACACCTGTAGCAATAACAAAATCTTCAGGGACA 16448 Query 268241 GGAGACTGGAGCATTTTCCACATTGCTTCG--ACATAGTCCCGCGCATGGCCCCAATCGC 268298 || |||||| |||| ||| || || || || || || || |||||||| | Sbjct 16449 TCCTGTTGAAGCATTAACCAC--TGCATCTCTACGTAATCGCGTGCGTGCCCCCAATCTC 16506 Query 268299 GCTTTGCGTCCATGTTCCCGAGG---AACAGGCATTTCTGCTTGCCGAGCTTCACGCGTG 268355 | || || | |||||||| ||||| ||| || | || ||||| | |||| Sbjct 16507 GTTTGGCCGATAAATTCCCGAGACTTAACAG---TTTTTGTGTACCAAGCTTGATCCGTG 16563 Query 268356 CAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGT 268415 | || | | |||||||||| ||||| || |||||||| || ||||| || |||| Sbjct 16564 CGAGCGCTCTTGTGATTTTTCTAGTCACAAATGTCTCGCCGCGCAGAGGCGATTCATGGT 16623 Query 268416 TGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCC 268475 |||| ||||| || || |||||| ||| ||||| || || ||||| || || ||| Sbjct 16624 TGAACAGGATACCATTACACGCGTACAACCCATAGGCTTCGCGGTAATTAACTGTAATCC 16683 Query 268476 AGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCT 268535 |||| ||| |||| |||||||| || || ||| || |||| || || || || || Sbjct 16684 AGTAGGCATACATTTTTGCAACCGCATAGGGACTGCGCGGATAAAATGGTGTTGTTTCCT 16743 Query 268536 TTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTG 268595 ||||||| ||||| | || ||| | | || ||||| || ||||| ||||| |||| Sbjct 16744 TTTGAGGAGTTTCTTGCACCAACCCATACAATTCAGAGGTTGAGGCTTGATAGAATTTTG 16803 Query 268596 TTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCAT 268655 ||||| | || || |||||||| || ||||||||||| | || || | | | Sbjct 16804 ATGTTTCCCCAAGTCCTAGAATTCGGATAGCTTCGAGCAAACGCAACGTGCCAAGAGCGT 16863 Query 268656 CCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCA 268715 | || || ||||| || ||| |||||||| ||| ||||| || || || ||| Sbjct 16864 CAGAGTTAGCCGTATATTCAGGCTCTTCGAATGAAACCGCCACATGACTTTGTGCAGCCA 16923 Query 268716 GGTTATAAACCTCATCCGG 268734 |||||||||||||| || Sbjct 16924 AATTATAAACCTCATCGGG 16942 >seq108602 Length=371 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | ||| | | ||||| || || || || |||||||| ||||||||||| || Sbjct 120 TCCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGA 179 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || || || |||||||| || || || || || || ||||| |||||||| ||||| Sbjct 180 TAGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGG 239 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| || || || ||||||||||| | |||||| ||||||||||| | | ||| || Sbjct 240 AATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAAC 299 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||||||||||||||| || || ||||| || || ||||||||| Sbjct 300 ATCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 >seq59582 Length=7566 Score = 172 bits (190), Expect = 1e-37 Identities = 401/595 (67%), Gaps = 15/595 (3%) Strand=Plus/Plus Query 268364 CGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGG 268423 || || ||||||||||| || ||||| ||||| || | || ||| || || || | Sbjct 901 CGGGTAATTTTTCGGGTTACAAACGTTTCGCCCCGACGTGGCGACTCATGATTAAATAAA 960 Query 268424 ATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCA 268483 || || || || || |||||||| || | |||||| || || || ||||||| ||| Sbjct 961 ATACCATTACAGGCAAACATGCCGTAGGACTCACGATAATTTACCGTTATCCAGTAGGCA 1020 Query 268484 AACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCT-TTTGAGG 268542 | | || ||||| || || || || || || | || ||||| || ||| |||| || Sbjct 1021 TATAGTTTAGCAACCGCATATGGCGAGCGAGGGTAAAATGGCGTAGT-TTCTCTTTGCGG 1079 Query 268543 GATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTT 268602 | ||| | || || | | || ||||||| ||||| ||||| || ||||| || Sbjct 1080 CGTCTCTTGCACCAAACCGTACAATTCAGAGGTCGCAGCTTGATAGAATTTAGTTGTCTT 1139 Query 268603 TTCGAGACCGCAG-ATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGT 268661 ||| || || ||| | || || || || |||| ||| || ||||||| |||| || | Sbjct 1140 TTCTAG-CCCCAGAAACCGAATCGCTTCAAGCAGACGCAGGGTTCCCAATGCATCTACAT 1198 Query 268662 CCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTAT 268721 | || || || || |||| ||| ||||||||| ||||| || || || | ||||||| Sbjct 1199 CAGCGGTGTATTCTGGCACCTCAAATGACACCGCCACATGACTTTGCGCAGCAAGGTTAT 1258 Query 268722 AAACCTCATCCGGTTTGACCTGCTGCACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGT 268781 | || || || || |||| || | ||| ||||||| | ||| | | || Sbjct 1259 ACACTTCGTCAGGACGAACCTCTTGAATTATCCGGGTTAGGTTCGAGGTATCGCTCAAGT 1318 Query 268782 CTCCGTAGTGCAACACAAGCTGCCCTGACT-CGGA------GTACTTGTCGTACAGTGCA 268834 | ||||| ||||| | | || ||| | |||| | |||| || |||| | Sbjct 1319 CACCGTAATGCAAAAATAACT--TTTGATTGCGGACATGAGGATCTTGATATA-AGTG-A 1374 Query 268835 TCAATTCGCTGGGTATTCAGTTGCGAAGAGCGCCGTTTGATTCCATGAACGACGTACCCA 268894 ||||||| | ||||| | | ||||| || ||||| || |||||||| | || || Sbjct 1375 TCAATTCTTTCTGTATTGAATGACGAAGCTCGTCGTTTAATACCATGAACCTCATAACCT 1434 Query 268895 ATGTTGATGAGGAATTCTGCAAGGTAAGAGCCATCTTGCCCCGTGATTCCCGTAA 268949 | | | || || || ||||| ||||| |||||||| || ||||| || |||| Sbjct 1435 TTTTCTAATAGAAACTCGGCAAGATAAGACCCATCTTGGCCGGTGATACCTGTAA 1489 >seq97248 Length=461 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||||||||| || ||||| ||||| || | ||| || ||||||||| Sbjct 391 ACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGATAATGTTCTTCCATCTTCT 332 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || ||||| || | ||| ||||| || ||||| |||||||| ||||||||| Sbjct 331 AATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGA 272 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||||||| || || || |||| | || || || ||||| || || || Sbjct 271 ATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACATCTAAGGTAATTGTCTTA 212 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||| ||||| || ||||| Sbjct 211 CCAGTTAAAGTCTTTACGAAGATTTGCAT 183 >seq19544 Length=280 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||| | | |||||| || || |||||||| || ||||| || ||||| | Sbjct 48 TTCCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAG 107 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || || ||||||||||| ||||| || || || || | ||||||||| || |||| Sbjct 108 ATAAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTG 167 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||| ||||||||||| | ||| || || || || || | | ||| | Sbjct 168 GGATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGA 227 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||| ||||| ||||| || | |||||| || || |||||||| Sbjct 228 CGTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCAT 276 >seq25765 Length=261 Score = 152 bits (168), Expect = 9e-32 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 268376 CGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC 268435 ||||||||||| || || || || | ||||||||||||||||| |||||||||||||| Sbjct 259 CGGGTCACGAATGTTTCACCGCGCCGCGGGCTCTCGTGGTTGAACAGGATGCCGTTGCAG 200 Query 268436 GCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCA 268495 || ||||||| || || ||||||||||| ||| ||||||| | | ||| || || Sbjct 199 GCATACATGCCGTAGGCTTCACGGTAGTTGACGGTGATCCAGTAGGAATACAGTTTGGCC 140 Query 268496 ACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACT 268555 || || || || || || || | || ||||| || ||||| ||| |||| | || Sbjct 139 ACCGCATAAGGCGAGCGGGGGTAAAACGGCGTGGTCTCTTTTTGCGGGGTTTCCTGCACA 80 Query 268556 TTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAG 268615 ||| | || ||||| || || || || ||||| || || || ||||| || || | Sbjct 79 AGGCCGTACAGTTCGGAAGTAGAGGCCTGATAGAATTTCGTGGTCTTTTCCAGCCCCAAC 20 Query 268616 ATTCGGATTGCCTCGAGCA 268634 | ||||| |||||||||| Sbjct 19 AGGCGGATCGCCTCGAGCA 1 >seq44811 Length=222 Score = 129 bits (142), Expect = 1e-24 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||| | | |||||||| || || || || || || ||||| || |||| Sbjct 45 TTCCTCCTCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGG 104 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || || || ||||| || ||||| || || || || ||||||||||| || |||| Sbjct 105 AGAGAGTTCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGTG 164 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTG 68403 |||| ||||| ||||| |||||||| | ||| ||| || ||||| |||| Sbjct 165 GAATTCCTTCTTTGTCCTGAATCTTAGTCTTAACGTTGTCAATGGTATCTG 215 >seq11290 Length=309 Score = 111 bits (122), Expect = 3e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 268362 CGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGA 268421 |||| ||||| || ||||| || || || || || || | || ||||| |||||||| | Sbjct 46 CGCGGGTGATCTTGCGGGTAACAAAGGTTTCTCCCCGGATCGGACTCTCATGGTTGAACA 105 Query 268422 GGATGCCGTTGCACGC--GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTA 268479 |||||||||| | || ||| | ||||| ||||| ||||||||||| | ||||||| Sbjct 106 TGATGCCGTTGGAGGCATGAAAA--CCATACGCCTCGCGGTAGTTCACTGTCATCCAGTA 163 Query 268480 TGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTG 268539 ||| | | ||||| || || || || || | |||| || ||||| || | ||| Sbjct 164 GGCATAAAGTTTTGCCACGGCATAAGGCGATCTCGGATAAAACGGCGTGGTTTCCGATTG 223 Query 268540 AGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAAC 268591 || | ||| | || ||||| || ||||| || || || || ||| | ||| Sbjct 224 TGGTACTTCGTGAACCTTGCCGAAAAGCTCCGATGTAGAGGCCTGGAAAAAC 275 >seq87644 Length=678 Score = 89.7 bits (98), Expect = 9e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || ||||| || || || || || || | || || ||||||||||| ||| Sbjct 352 TGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGATAAGGTTCTTCCATCTTCTAATTGC 293 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || ||||| || || | ||||||||| || || ||||| ||||| || |||||||| || Sbjct 292 TTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920364938397440