Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq108602 111 1e-19 seq19544 91.5 1e-13 seq87644 87.8 1e-12 seq44811 86.0 4e-12 >seq108602 Length=371 Score = 111 bits (122), Expect = 1e-19 Identities = 184/265 (69%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||| || | || || |||||||| ||| | || ||| | Sbjct 348 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACCTTAGATGTTGAACAATC 289 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || ||| ||||||||||| | || | |||| Sbjct 288 TGACACCATCGACAATGTCAAGACTAAGATTCAAGATAAAGAGGGAATTCCACCAGACCA 229 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||||||||||||||| |||||| ||||||| | |||| | | ||||| || Sbjct 228 ACAGAGACTTATCTTTGCTGGAAAACAATTAGAAGACGGTAGAACTCTATCAGATTATAA 169 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATA 22072 ||||| || ||||||||||| ||| |||| | | | ||||||||| |||| | Sbjct 168 CATTCAAAAAGAATCTACTCTCCATTTGGTCCTCAGACTTAGAGGAGGATTCTAATCTAA 109 Query 22073 AAAACCATAAATATACATTAAATTT 22097 | ||| || ||| || |||||| Sbjct 108 ATTACCTTACATA---ATCAAATTT 87 >seq19544 Length=280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || ||||| || ||| | || || || || || || ||||||||| | || ||| Sbjct 279 AATATGCAGATCTTTGTAAAGACCTTGACTGGAAAGACCATTACCCTTGACGTCGAACAA 220 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | || | ||| || ||| ||||| || ||| | || | | Sbjct 219 TCCGATACTATTGATAATGTAAAGACTAAGATTCAAGATAAGGAAGGTATCCCACCAGAT 160 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | |||||||| || || ||| |||||||| || ||| | | |||||| Sbjct 159 CAACAAAGATTGATCTTTGCAGGAAAGCAATTAGAAGATGGAAGAACCTTATCTGATTAC 100 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTA-TTACGTTTACGAGGAGGA 22061 ||||| |||||||| || ||||||||| ||||| ||| ||| |||||||| Sbjct 99 AATATCCAGAAGGAGTCCACTCTTCATTTGGTACTTAGACTTA-GAGGAGGA 49 >seq87644 Length=678 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| |||||||| || | ||| | | ||||| ||| | |||||||| || || Sbjct 234 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAAAGATTAATCTTTGCCGGAAAG 293 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||| |||||||| || ||| | | || |||||||||||||| |||||||| |||||| Sbjct 294 CAATTAGAAGATGGAAGAACCTTATCTGACTACAATATTCAGAAAGAATCTACCCTTCAT 353 Query 22038 ATGGTATTACGTTTACGAGGAGG 22060 | || | | ||| |||| || Sbjct 354 CTCGTCCTCAGATTAAGAGGTGG 376 >seq44811 Length=222 Score = 86.0 bits (94), Expect = 4e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||||||||||||||||| || ||| | ||||| | |||| | |||| ||| Sbjct 156 CAACAAAGACTTATCTTTGCTGGAAAGCAATTGGAAGACGGTAGAACTCTCTCCGACTAC 97 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||||||||||||||| || |||| Sbjct 96 AACATTCAGAAGGAATCTACTCTCCACTTGGT 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357648390159808