Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17]
109,152 sequences; 80,407,893 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq97248 120 7e-22
seq19544 118 2e-21
seq108602 105 2e-17
seq87644 84.2 5e-11
>seq97248
Length=461
Score = 120 bits (132), Expect = 7e-22
Identities = 179/249 (72%), Gaps = 4/249 (2%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
||| || | ||||||||| || | ||||| ||| ||||| || || || || || |
Sbjct 410 TCCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGA 351
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
| || | ||| ||||||||||| ||||| |||||||||| | ||||||| |||
Sbjct 350 TAATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGG 291
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTCTA 288424
||| |||||||| || || || || | || ||||| || |||| ||| | | | || |
Sbjct 290 GATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTG-CTCAA 232
Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT-TATGTTATTC 288483
| || | || || ||||| || || | |||||| ||||| || ||||| | ||||| |
Sbjct 231 CATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATTTGTTA-TA 173
Query 288484 TAATATTTT 288492
||||||||
Sbjct 172 AAATATTTT 164
>seq19544
Length=280
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315
||||||||||| | ||||| ||| || || |||||||| || || | | || | |
Sbjct 59 AGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGATAAGGTTCTT 118
Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375
|| ||||||||||| |||||||| ||||||| | |||||| |||||| |||||
Sbjct 119 CCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATACCTTCC 178
Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435
||||| || || || | || || || || |||| |||| ||| || || || ||
Sbjct 179 TTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGACGTCAAGGGTA 238
Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| || |||| ||||| || || ||||||||
Sbjct 239 ATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCAT 276
>seq108602
Length=371
Score = 105 bits (116), Expect = 2e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315
||||| || || | ||| | || ||||||||| || ||||| || | || || |
Sbjct 130 AGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGTTCTA 189
Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375
|||||||||||||||||||| || ||||| || | |||||| ||| ||||| |||
Sbjct 190 CCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCCCTCT 249
Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTCTACTTCGAGCGT 288434
||||| || || || | || || || || || | || | | | ||| || || | ||
Sbjct 250 TTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTG-TTCAACATCTAAGGT 308
Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||| || || || || |||||||| || || |||||||||
Sbjct 309 GATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348
>seq87644
Length=678
Score = 84.2 bits (92), Expect = 5e-11
Identities = 107/146 (73%), Gaps = 6/146 (4%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | | ||| || |||||||||| || |||||| || ||||| ||||| |
Sbjct 376 CCACCTCTTAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGAT 317
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || | ||| ||||||||||| ||||| || ||||| | | |||||| |||||
Sbjct 316 AAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGA---TCTGGA 260
Query 288367 ---ATTCCTTCTTTATCCTGGATTTT 288389
|||||||||||||| || |||||
Sbjct 259 GGAATTCCTTCTTTATCTTGAATTTT 234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178004641525056
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |