Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq42898 96.9 1e-15 seq21319 93.3 1e-14 >seq42898 Length=225 Score = 96.9 bits (106), Expect = 1e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 52448 AATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGAA 52507 ||||| | ||||| || || || ||||| ||||||||||| || ||||| || || ||| Sbjct 146 AATGCGCTTGAAGCCATCCGATTTTATGTTAGCTTTGCTTGTTCTTTTGCTTTTGCTGAA 87 Query 52508 CGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCACTT 52567 || | || | ||||| ||||| ||||| ||| ||||| || || ||||||||| | Sbjct 86 CGCGAATTGCTTGAAGGCAATGCGAAGATAATTAAGTTAATAGCGCGTGATGAAGCATTA 27 Query 52568 CATTTGACAGGAACTCAGCACAT 52590 || || || || ||||| || || Sbjct 26 CACTTAACCGGTACTCAACATAT 4 >seq21319 Length=274 Score = 93.3 bits (102), Expect = 1e-14 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 52547 ATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCA 52606 |||||||| |||||||||||||| | || || ||||| || || |||| ||| || | Sbjct 273 ATTGCACGTGATGAAGCACTTCACCTAACGGGTACTCAACATATATTGAATCTT--TGGA 216 Query 52607 AGT--GGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCTGA-ATGCCGCCAAGAATGC 52663 || ||||||||||| || ||||||| ||| | | || |||| | |||| | | Sbjct 215 TGTCAGGAAAAGATGATCCTGAAATGGCCGAAGTCAGTAAAGACATGC-GTCAAGCAGGT 157 Query 52664 CAGAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAA 52723 || | ||| |||| || | ||||| || || ||||| | ||||| || ||| Sbjct 156 TTACAAATATTCCTCGATGTTGTCGATCAAGAAAAAGAGTGGGCTCAGTATTTATTTAAA 97 Query 52724 GATGGCTCTATGATTGGCTTAAA 52746 ||||| || |||||||||||||| Sbjct 96 GATGGATCAATGATTGGCTTAAA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169178829181888