Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq1104 100 1e-16 >seq1104 Length=359 Score = 100 bits (110), Expect = 1e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 6574 CGCCCGGGCGCTTTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGT 6633 |||||||| || ||| || |||||||| | |||| | | || || || ||||| Sbjct 53 CGCCCGGGATCTGTGGAACCGGATCATGCAGGCAACCTTTGCCTATGCCGAACCCGGCGT 112 Query 6634 GCTGTTCATCGACGCGATCAACCGCATG-AACAACCTCTGGTACTGCGAGACCATCGCCG 6692 | || || ||| ||||| || | |||||||| | |||||||| ||||| || Sbjct 113 AATTTTTATTGACCGCATCAAT-GCGCGCAACAACCTGTCTTACTGCGAAACCATTCACG 171 Query 6693 CCACGAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCT 6752 |||| || || |||||||| || ||||| |||||||||||||||||| || | || ||| Sbjct 172 CCACCAATCCGTGCGGTGAACAGCCGCTGCCGCCCTACGGTGCCTGCCTGCTCGGTTCCA 231 Query 6753 TCAACCT 6759 |||| || Sbjct 232 TCAATCT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187356836632000