Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq59922 140 4e-28 seq75063 107 2e-18 seq64137 105 8e-18 seq89378 96.9 4e-15 seq30618 89.7 6e-13 seq68204 82.4 9e-11 >seq59922 Length=6033 Score = 140 bits (154), Expect = 4e-28 Identities = 882/1402 (63%), Gaps = 25/1402 (2%) Strand=Plus/Minus Query 113933 CGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 113992 ||||| |||||| || | || ||||| || || || || ||||| || | |||||| Sbjct 3134 CGTCTTGTATAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGTTTCCAAGGATTTGA 3075 Query 113993 GCGGTGGAGGCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTACGGAGACCCTTTTCCCT 114051 || || || ||||| ||||| ||||||| | | || | |||||| | ||| | ||| | Sbjct 3074 GCTGTTGAAGCTGTTGGCATTGGTGCCAATAACAATGA-GTTACGCACACCGTGCTCCAT 3016 Query 114052 AATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATC 114111 | | | || | ||||||| || | || ||| | | ||||||||| Sbjct 3015 CACTTCTGCTTTCAATACGTCCCATTCCCATCTGCTTGTTGGAGTAACATTCCACATATC 2956 Query 114112 AAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAAC 114171 || |||| ||||| || |||||||||| ||| | | | |||||| || ||||| Sbjct 2955 GAATTGGAATTGACCTTTTGAAACTGGCGATCCTTCATAAGATTGGTATGGTCCATCAAC 2896 Query 114172 CTCCGCCAATTCGG-AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 114230 | || || || || | || | | |||| ||||||||| ||||||| Sbjct 2895 TTTAGCTAAATCTTTAGATGCAGTC-ATTGAAGCGTAATACATTGTTTCAAAAACTTCTC 2837 Query 114231 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 114290 |||| ||| | || || || || ||||| | | || || || || |||| | Sbjct 2836 TGTTCAATGCTCTTGCTTCTTCTGATTCAAATGGCAATCCCATTAAGATGAAAGCATCTG 2777 Query 114291 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 114350 | | ||||| ||||| | |||||||| || || | ||| ||||| ||| ||| | Sbjct 2776 CTAACCCTTGAACACCTAATCCAATTGGACGGTGACGCATGTTAGAGTTTTTAGCTTCTT 2717 Query 114351 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 114410 | || || || || || | ||| || | |||| | || || | | || | Sbjct 2716 CAACTGGGTAGAAGTTACCATCAATGATTTTATTCAAGTTCAATGTCGCTTGGTACGTTA 2657 Query 114411 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 114470 || | || |||| ||| || | | || ||| | ||||| ||||| | | Sbjct 2656 CCTCGAACAATTTGTCGTGATCGAATTTCCCT---TCATCAGTAACATATTTAGGCAATG 2600 Query 114471 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 114530 | | || |||| ||||| || | |||||| |||||||||||||||| || | Sbjct 2599 CTAAAGAAGCCAAGTTACAAACTGCAACCTCATCTGGCGCAGTGTACTCTATAATCTCAG 2540 Query 114531 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 114590 |||| || |||||| |||||| || || ||||| | ||| ||||| |||| ||| | Sbjct 2539 TACATAAGTTTGAAGACTTAATTGTACCTAAGTTTTGTTGGTTTGATTTTGAGTTTGCAG 2480 Query 114591 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT-TGAGAATAGCCTT- 114648 |||| ||||| | |||||| || || || ||||| |||| || | | ||| | || Sbjct 2479 CATCTTTGTACAACATGTAAGGAGTACCTGTCTCAATTTGAGATTCTAAGATT----TTG 2424 Query 114649 --CCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTG 114706 ||| | || ||| | || | || ||| | | |||||||| ||| Sbjct 2423 AACCAAAGGTCTTGTGCTTTGATTGTTTTTCTTCCTTTCCCTGCTTTTTCGTACTTCGTG 2364 Query 114707 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGGCA 114765 || | ||||| || || ||| | ||||| || ||||| || || | || || Sbjct 2363 TACAACGCTTCGAATTCAGCACTGTGCACATCTGAAAGACCTGG-GCATTCGTGCGGACA 2305 Query 114766 GAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAG 114825 | | || ||| | ||| || | ||||| | |||||| | ||||| | ||| | Sbjct 2304 CATTAAAGTCCACTCTCCATTTTCTTTCACACGTTGCATGAATAAATCTGGAACCCACAA 2245 Query 114826 AGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 114885 ||| | || | ||| | | ||||| | || ||||| ||| || || Sbjct 2244 AGCGTAAAATAAATCTCTTGCTCTTTGCTCTTCTTTACCGTGATTTTTCTTCAAGTCTAA 2185 Query 114886 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG--- 114942 ||||| | | ||| || ||||| || |||| ||||| |||| || || ||||| Sbjct 2184 GAAGTCAAATACATCAGCATGCCAAGGCTCCAAGTACATTGCGAAAGAACCTTTACGTTT 2125 Query 114943 ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGAT 115002 | ||| | || | ||| || || || || | |||||||| | | |||||||| ||| Sbjct 2124 TCCTCCACCTTGATCTACGTATCTAGCAGTATCGTTAAATACTCTTAACATTGGAACGAT 2065 Query 115003 ACCATCAGATTGGCCATTTG-TCCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGG 115060 ||| | ||| || |||| ||| || || || || | || | || | || Sbjct 2064 ACCGTTAGAAGCACCGTTTGTTCCTTTGATGTATGAACCT--GTCGCACGGATGTTGTGC 2007 Query 115061 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 115120 || || ||||| || || || | | ||||| || || || | | | || | Sbjct 2006 ATAGCCAATCCAATTCCACCAGCTGATTGAGAGATCTGAGCACATTGTTTTAATGTGTCA 1947 Query 115121 TAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGC 115180 || || || || || || |||| ||| | |||||| || ||||||||||| Sbjct 1946 TAAATTCCTTCAATACTATCTTCCTTCATTGTTAAAAGGAAACAAGATGACATTTGTGGT 1887 Query 115181 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 115240 |||| || |||| ||| || | |||||||| ||||| ||||| |||| ||||| Sbjct 1886 TTTGGCGTTCCAGAGTTAAACAACGTTGGTGTTGCGTGTGTGAACCATCCTTCTGACATT 1827 Query 115241 TTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 115300 | ||| |||| | | | | || |||| |||||| || | || || ||| Sbjct 1826 AAGTTGTATGTCTTAATTGCAGAGTCGATATCTTTTTTGTGAATTCCAACAGAAACACGC 1767 Query 115301 ATAAACATGTATTG-GGGTGTT 115321 || ||||| | ||| ||| ||| Sbjct 1766 ATCAACATTTGTTGTGGGCGTT 1745 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| | ||||| | || || ||||| | || |||||||| || || | ||| Sbjct 832 CCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGAAAGCCCTGGCATCAGTCCTCTTTTC 773 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 ||||||||| |||| | ||| || ||||| |||||||| ||||| ||||| || || Sbjct 772 TTCAACCAGTAAATTGAACAGAAAGAACCTGAGAAGAAAATTCCTTCCACTGCTGCAAAT 713 Query 126185 GCAAAGAGACGCTCAGCAAAGGA 126207 |||| || | || ||||| || Sbjct 712 GCAACAAGTCTTTCTGCAAATGA 690 >seq75063 Length=1318 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| || | ||||| | ||||| ||||| || || |||||||| ||| | ||| Sbjct 426 CCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTT 485 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||||||||||||| || ||||| || || |||||||| ||||| || ||||| || ||| Sbjct 486 TTCAACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAAATTCCTTCTACACAAGCAAAC 545 Query 126185 GCAAAGAGACGCTCAGCAAAGGAG 126208 |||| | | |||||||| ||| Sbjct 546 GCAATCAATCTTTCAGCAAATGAG 569 >seq64137 Length=2701 Score = 105 bits (116), Expect = 8e-18 Identities = 246/368 (67%), Gaps = 5/368 (1%) Strand=Plus/Minus Query 114285 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 114344 |||| || || ||||| ||||||| |||| || | || ||| | ||| || | | || Sbjct 1694 CATCAGCAAGCCCTTGCACACCGATTCCAACAGGTCTATTTCTAAAATTTGAATATTCAG 1635 Query 114345 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 114404 | || ||||| || || |||| ||||| || || | || || || | | | Sbjct 1634 CTTCAGGAACTGGATAGAAGTTATTATCAATAACTCTGTTCAAGTTCTTTGTAATGATCA 1575 Query 114405 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAG 114464 | || | |||||| ||| ||||||| ||||| | | | ||||| || || || | Sbjct 1574 TAGTAACTTCATGTAGCCTTTCGTAGTCAAAGGTACCA---TCTTCTAATACGTATTTTG 1518 Query 114465 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 114524 | | | ||||| || || ||||| |||| | ||| |||||||||||||| || | Sbjct 1517 GCAATGAAATTGAGGCGAGGTTACATACAGCTACTTGATCTTTATCAGTGTACTCCATGA 1458 Query 114525 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 114584 | || || | ||||||||||| || || || | |||| || || || ||| | Sbjct 1457 TCTCACAGCAGAGGTTTGAACTCTTGATAGTTCCAAGATTCTGCTGGTTAGATTTTCCAT 1398 Query 114585 TA-CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 || || | |||||| || ||||||||||| || ||||| | || |||| || || Sbjct 1397 TAGCATG-ATCCTTATACAGCATGTATGGGACTCCAGTCTCTATCTGTGACTCAAGGATG 1339 Query 114644 GCCTTCCA 114651 || ||||| Sbjct 1338 GCATTCCA 1331 >seq89378 Length=630 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 |||||||| || || ||||| | | || | || | | ||| |||||| ||||| Sbjct 295 CGATCAAAACGTCCAGGGCGCAACAATGCTTTATCTAACACATCGGGGCGGTTAGTCGCA 236 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || ||||||| ||||| | | ||||| |||||||| || || ||||||||| Sbjct 235 GCAATGACAATAATGCCTTCATTGCCTTCAAAACCATCCATTTCTACCAGCAGTTGATTG 176 Query 10907 ATGGTTTGTTCGCGTTCATCATT--CGCGGGCATA-CCACCCGCACTGCGTTGCTTACCG 10963 | |||||| || || |||||||| | | | ||| ||||| ||| | | | ||| Sbjct 175 AGGGTTTGCTCACGCTCATCATTACCACCGCCATGGCCACCACCACGGTGACG---ACCT 119 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGT---TGATTTTCACGGGCAACTTCA 11020 |||||||| || |||||||| || | || || || || |||| ||| ||| Sbjct 118 ACGGCGTCGATCTCATCGATAAATATAATGCAGGGCGCCTGCTTTTT---GGCTTGCTCA 62 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 || || || || || | ||||| ||||||||||||||||| ||||| Sbjct 61 AACATGTCCCGAACCCGGGAAGCACCCACACCCACAAACATTTCTACAAA 12 >seq30618 Length=250 Score = 89.7 bits (98), Expect = 6e-13 Identities = 173/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 10904 TTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTAC 10961 |||| || |||||||| || ||||| ||| | || |||||||| || || | Sbjct 248 TTGAGCGTCTGTTCGCGCTCGTCATTGCCGCCGCCAAG--ACCCGCACCACGGTGACGGC 191 Query 10962 CGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAA 11021 |||| ||||| ||||||||||| || | ||| || ||| ||||| ||| || | Sbjct 190 CGACAGCGTCGATTTCATCGATAAAGATGATGCAGGGTGCATTTTTCTTGGCCTGCTCGA 131 Query 11022 AGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGG 11081 | || || ||||| | | ||||| || || |||||||| || || |||| || | | Sbjct 130 ACATGTCGCGGACGCGGCTTGCACCAACGCCGACAAACATCTCGACGAAATCGGAACCCG 71 Query 11082 AACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 11140 | || | || ||| || || |||| ||| || || | ||| ||||| || | |||||| Sbjct 70 -ATATGGTGAAGAACGGCACATTGGCTTCGCCTGCAACGGCGCGGGCCAGCAAGGTCTTG 12 Query 11141 CCCGTCCCAGG 11151 || || || || Sbjct 11 CCGGTACCGGG 1 >seq68204 Length=1977 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 10874 TCAAAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATT--C 10930 ||||| ||||||||||| | |||| | || |||| ||||| ||||| |||||||| | Sbjct 1976 TCAAAACCATCCATCTC-GACAAGCAACTGGTTGAGCGTTTGCTCGCGCTCATCATTGCC 1918 Query 10931 GCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 10990 || | || ||| || | ||| || ||| || || || || |||||||| || | | Sbjct 1917 GCCGCCAAG--ACCGGCGCCGCGATGACGACCTACAGCATCGATCTCATCGATAAAGATG 1860 Query 10991 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACA 11050 ||||| || ||| | ||| ||||| || || || || | | ||||| || Sbjct 1859 ATACAAGGCGCATTCTTTTTGGCTTGCTCAAACATGTCGCGCACACGGCTTGCACCAACC 1800 Query 11051 CCCACAAACATTTCCACAAA 11070 || ||||||||||||||||| Sbjct 1799 CCGACAAACATTTCCACAAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596538570748160