Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq59922 96.9 3e-15 seq87644 89.7 5e-13 seq108602 86.0 6e-12 >seq59922 Length=6033 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 154838 ACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTT 154897 ||||| ||| || || | ||| || || || |||||||| || | |||| | | || Sbjct 2343 ACTGTGCACATCTGAAAGACCTGGGCATTCGTGCGGACACATTAAAGTCCACTCTCCATT 2284 Query 154898 TTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGC 154957 || || || |||| ||| || ||||| || |||||||||||||| || ||||| | || Sbjct 2283 TTCTTTCACACGTTGCATGAATAAATCTGGAACCCACAAAGCGTAAAATAAATCTCTTGC 2224 Query 154958 CTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTG 155017 ||| ||||| || ||| ||| || | || || ||| ||| || || || Sbjct 2223 TCTTTGCTCTTCTTTACCGTGATTTTTCTTCAAGTCTAAGAAGTCAAATACATCAGCATG 2164 Query 155018 CCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTTCCT---CCTTGATCCACGT 155073 ||| ||||| || || | || | | ||||| ||||||||| |||||||| |||| Sbjct 2163 CCAAGGCTCCAAGTACATTGCGAAAGAACCTTTACGTTTTCCTCCACCTTGATCTACGT 2105 >seq87644 Length=678 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| || || ||||||| || |||||||| ||||| ||||| || | | ||| | Sbjct 367 AATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGATAAGGTTCTT 308 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | ||||| |||||| | || | | || || || ||||||||||||||| Sbjct 307 CCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCT 248 Query 64346 TTTTCTTGTATTTT 64359 || ||||| ||||| Sbjct 247 TTATCTTGAATTTT 234 >seq108602 Length=371 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || || | ||| | || ||||||||||||||||| ||||||| | || | | Sbjct 132 TCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGTTCTACC 191 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||| | || || || ||| | || || | ||| ||||| || |||||||| ||||| Sbjct 192 GTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCCCTCTTT 251 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||| ||| || | || ||| || || |||| || | Sbjct 252 ATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACATCTAAGGTGAT 311 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || || | ||| || || || || |||||| Sbjct 312 GGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498963084634880