Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq64137 118 1e-21 seq59922 98.7 1e-15 seq3443 84.2 2e-11 >seq64137 Length=2701 Score = 118 bits (130), Expect = 1e-21 Identities = 371/574 (65%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 94068 TTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTT 94127 |||||||||| | || || || || ||| || || || ||||| ||||| ||||||| Sbjct 940 TTCCTACATCAGAGGAACAAACGGTCACTCAAATGGACTTGTCCCAATGCTTAGGGTCTT 999 Query 94128 CAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGT 94187 ||| || | || | || || ||||| || || || | ||| ||||| ||||||| | Sbjct 1000 CAATGACACTGCAAGATATGTTGACCAAGGAGGCGGTAAGAGAAAGGGAGCTTTCGCTAT 1059 Query 94188 CTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGG 94247 ||| ||||| || ||||| | || | | | ||| | || || | |||||||| || Sbjct 1060 CTACCTCGAACCATGGCATCCAGATATTTATGACTTCCTTAACTTGAGGAAGAACCATGG 1119 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || ||| |||| || |||||||||||||||||| | ||||| || | || || Sbjct 1120 TAAAGATGAACAGAGAGCAAGAGACCTCTTCTACGCTTTGTGGGTTAGTGATATATTCAT 1179 Query 94308 GAAACGCGTCGA----GAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCG 94363 || | || || || || | ||||| || || ||||| |||||||| ||| Sbjct 1180 GAGGAGAGTAGAAGCTGATGAA----GACTGGACACTCTTCTGTCCAAATGAATGCCCCC 1235 Query 94364 GACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGG 94423 | ||| ||| ||| ||| |||||||| | |||| || || | | | Sbjct 1236 AATTGTTCGAAACTTGGGGAAAAGAATTTGAAGAACTCTATGAGAAATATGAGACTGAAG 1295 Query 94424 GCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGG 94483 | || | || ||| | | | || | || ||| || ||| | || |||| Sbjct 1296 GAAAAGGAAGAAAGACTGTCAAGGCACAACATCTATGGAATGCCATCCTTGAGTCACAGA 1355 Query 94484 TGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGC 94543 | ||||| || || ||||| ||| ||||| || || | || || ||||||| Sbjct 1356 TAGAGACTGGAGTCCCATACATGCTGTATAAGGATCATGCTAATGGAAAATCTAACCAGC 1415 Query 94544 AGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTC 94603 || | || || |||||||| || || || ||| ||||| | ||||| ||| | Sbjct 1416 AGAATCTTGGAACTATCAAGAGTTCAAACCTCTGCTGTGAGATCATGGAGTACACTGATA 1475 Query 94604 CGGACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 || | | ||||| |||||||| | ||| || Sbjct 1476 AAGATCAAGTAGCTGTATGTAACCTCGCCTCAAT 1509 >seq59922 Length=6033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 470/744 (63%), Gaps = 10/744 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || |||| ||| | || || || ||||| ||||| || |||||||| Sbjct 1852 GCAACACCAACGTTGTTTAACTCTGGAACGCCAAAACCACAAATGTCATCTTGTTTCCTT 1911 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | |||| || || ||||||| |||| | || | ||||| Sbjct 1912 TTAACAATGAAGGAAGATAGTATTGAAGGAATTTATGACACATTAAAACAATGTGCTCAG 1971 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| ||| || || ||||| || | | | ||| || | ||||| | ||||| Sbjct 1972 ATCTCTCAATCAGCTGGTGGAATTGGATTGGCTATGCACAACATCCGTGCGACAGGTTCA 2031 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| || || || || | || ||||| |||| || ||| | | || || ||| Sbjct 2032 TACATCAAAGGAACAAACGGTGCTTCTAACGGTATCGTTCCAATGTTAAGAGTATTTAAC 2091 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || | ||||| || || ||||| || | | || ||||||||||| | || Sbjct 2092 GATACTGCTAGATACGTAGATCAAGGTGGAGGAAAACGTAAAGGTTCTTTCGCAATGTAC 2151 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| ||||| || || || | ||| | ||| || || || ||||| || Sbjct 2152 TTGGAGCCTTGGCATGCTGATGTATTTGACTTCTTAGACTTGAAGAAAAATCACGGTAAA 2211 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | | || || ||||| | || |||||| | ||||| ||||| | || ||| || Sbjct 2212 GAAGAGCAAAGAGCAAGAGATTTATTTTACGCTTTGTGGGTTCCAGATTTATTCATGCAA 2271 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || | |||| | |||| | | | ||||| | ||||| || || || || Sbjct 2272 CGTGTGAAAGAAAATGGAGAGTGGACTTTAATGTGTCCGCACGAATGCCCAGGTCTTTCA 2331 Query 94372 GACGTTTGTGGATCGCG----TTTTGAAGACTTGTATGCTCGTTACG-AATCGCAGGGCA 94426 || |||| | | | || |||| ||||| | |||| || |||||| | Sbjct 2332 GA----TGTGCACAGTGCTGAATTCGAAGCGTTGTACACGAAGTACGAAAAAGCAGGGAA 2387 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 ||| || || || | || | || ||| | ||| | || || | | Sbjct 2388 AGG-AAGAAAAACAATCAAAGCACAAGACCTTTGGTTCAAAATCTTAGAATCTCAAATTG 2446 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 |||| ||||| || ||||| |||| ||| || ||| ||| | || || ||||| || Sbjct 2447 AGACAGGTACTCCTTACATGTTGTACAAAGATGCTGCAAACTCAAAATCAAACCAACAAA 2506 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 || | || || ||| || || | || || |||||| | ||||| ||| | || | Sbjct 2507 ACTTAGGTACAATTAAGTCTTCAAACTTATGTACTGAGATTATAGAGTACACTGCGCCAG 2566 Query 94607 ACGAGATTGCTGTGTGTAACCTGG 94630 | ||| |||| || |||||| ||| Sbjct 2567 ATGAGGTTGCAGTTTGTAACTTGG 2590 >seq3443 Length=346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 ||| | ||||| |||| ||||| || ||| ||||||||||| || ||||| || | Sbjct 203 CACAATGTACGGGCCACAGGTTCTTATATCGCAGGTACCAATGGGACTTCCAATGGTATT 262 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||||| | ||| || ||| | | ||||| ||||| || ||||| ||||| | | Sbjct 263 GTGCCCATGCTGCAGGTTTTTAACGATACTGCGCGTTACGTAGATCAGGGCGGTGGAAAG 322 Query 94168 AGGAAGGGTTCTTTCGCGGTCTAT 94191 | |||||| ||| || ||||| Sbjct 323 CGTAAGGGTAGTTTTGCTATCTAT 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494048199665920