Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_011222.1 Length=44929 Score E Sequences producing significant alignments: (Bits) Value seq59718 100 8e-17 >seq59718 Length=6799 Score = 100 bits (110), Expect = 8e-17 Identities = 213/312 (68%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 20131 AACCCGGAGTCAAGAAGGCTAATTGTTAGTGCTTGGAATGTTGGAGAAATACACATGATG 20190 || ||||| |||||||||| || ||| ||||||||| |||| || | ||| ||| Sbjct 1948 AATCCGGATTCAAGAAGGCACATCGTTTCTGCTTGGAACGTTGCCGACGTTGACAACATG 1889 Query 20191 GCACTTCCTCCGTGCCACTGCTTTTTTCAGTTCTATGTGTCTGAGTCCGGTTATTTGGAC 20250 || | || || || || | || || || ||||| || |||| ||| | || | Sbjct 1888 GCCTTACCGCCTTGTCATTCTTTGTTCCAATTCTACGTTGCTGA---CGGAAAATTAAGC 1832 Query 20251 TTGAAACTGTACCAAAGAAGCGCAGACCTATTTTTAGGCGTTCCTTTCAATATTGCATCT 20310 | || |||||||||||||||| || || ||||||||||| || || ||||||||| Sbjct 1831 TGCCAATTGTACCAAAGAAGCGCGGATACTTTCTTAGGCGTTCCATTTAACATTGCATCT 1772 Query 20311 TATTCTATCTTGCTGTCTATG--GC-TGCACAGGTTTGCGGTTTAAAGCCTCGTAGA-TT 20366 || | ||||| | ||| || |||||| || |||| ||| | | | || || Sbjct 1771 TACGC---ATTGCTCACAATGATGCTTGCACAAGTATGCGATTTGGA-ATTGGGCGACTT 1716 Query 20367 CATTCATACGATCGGTGACGGACATATATATTTGAATCACGTTGAGCAGGTGAAAGAACA 20426 | ||||||| ||||||| | ||| || ||| || || |||| || ||| | ||| Sbjct 1715 CGTTCATACCTTCGGTGATGCACACATTTATAGTAACCATCTTGAACAAGTGGAGTTACA 1656 Query 20427 ATTGAGTAGAGA 20438 ||| || || || Sbjct 1655 ATTAAGCAGGGA 1644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143465002187584