Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq76653 96.9 3e-15 >seq76653 Length=1214 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 118137 ACGTCGTTGGCGCCGTAAAAGGCGATACACTCCGACAGTTTTCCGTCGCGACCGGCCCTT 118196 ||||| || || |||||| | || |||||| | ||| || ||||| || | Sbjct 891 ACGTCTTTATAGCGGTAAAACGAAATGCACTCCCCTTCTCCTCCATCACGACCAGCACGA 832 Query 118197 CCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTGTGATGTATCACCAACCGC 118256 || |||| |||||||||| ||||||||||| || ||| |||||| ||||| || || Sbjct 831 CCAGTCTCCTGATAATAACTCTCCAGTGATTTTGGAATATCGTGATGAATCACAAAACGA 772 Query 118257 ACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGT 118294 || || || |||||||| ||||| || || |||||||| Sbjct 771 ACATCTGGCTTATCGATTCCCATTCCAAATGCTATCGT 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381264931461888