Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq92651 95.1 5e-15 seq19195 84.2 9e-12 >seq92651 Length=554 Score = 95.1 bits (104), Expect = 5e-15 Identities = 172/244 (70%), Gaps = 17/244 (7%) Strand=Plus/Minus Query 112 TTTTACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGC-GT 170 ||||| || ||| ||||| ||||| ||||| || ||||||| ||| || || || || | Sbjct 240 TTTTATCAATTTGGCCATTGCAATCGTGGCATAAACATCAGACATAGCGTCATGTGCTGA 181 Query 171 TGCTATGTTCAATACCATTCGCTTTGGTTA--AATGCTCAAGGCGAAAGCTCGGTA---G 225 | | ||| |||||||||||||| || | ||| || || ||||||||| | | Sbjct 180 TTC-ATGGCTAATACCATTCGCTTGAGTGAGTAATTCTAAA--CGAAAGCTCACCACCTG 124 Query 226 ACCGTCATCATTTTCA------GGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGC 279 | ||||| |||| ||||| ||||| ||||| || ||||| ||||| || || Sbjct 123 TTCACCATCACGTTCAACCGTTGGCCAATTTATACCTTCAGGACGCAGTGCATAACATGC 64 Query 280 ACGCATAACATCCAGTAAATCCCAGCGCGAGTTATCATGCTGCCAGCTC-CAGGCGTAAG 338 ||||| | ||| | | |||||| || ||| ||| ||||| ||| | |||||||| Sbjct 63 ACGCACCATATCAATAATATCCCAACGACTATTACCATTTTGCCA-CTCACGGGCGTAAG 5 Query 339 GATC 342 | || Sbjct 4 GGTC 1 >seq19195 Length=277 Score = 84.2 bits (92), Expect = 9e-12 Identities = 134/190 (71%), Gaps = 7/190 (4%) Strand=Plus/Minus Query 35762 CAATGTGGAAATTGGTCTTGCCCTGCGTTCTGACCGCTGGGCGGGTGCGGATTTCTGGGA 35821 |||||||||||| || |||| |||| || || |||||| || || |||| |||| Sbjct 212 CAATGTGGAAATCGGGCTTGGACTGCACTCAGATCGCTGGCGTGGGGCTGATTACTGGTT 153 Query 35822 GCAGCAGGGCAGG---CGCGTCAGCC--TGGACGATATCCTGCAGCGCGCTGATGTGGTG 35876 || | | ||||| || || | | |||| || | | |||| |||| || Sbjct 152 GCTG--GCGCAGGATCCGGGTTTGACGCTGGATGAGCTGATCGAGCGGTCTGAAGTCTGC 95 Query 35877 ACGGTGGGGATTGACGGCGGGGGCCTGGATGATCTGCTGGGAATGTACGTGATTGGCCGT 35936 ||| |||| ||||| ||||| |||||||| ||||||||||| || ||| | |||||| Sbjct 94 ACGATGGGCATTGATGGCGGCGGCCTGGACGATCTGCTGGGGCTGACGGTGCTGGGCCGT 35 Query 35937 GACAGGGAAA 35946 |||| ||||| Sbjct 34 GACAAGGAAA 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198491185780416