Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq97248 140 2e-28 seq108602 131 1e-25 seq19544 123 2e-23 >seq97248 Length=461 Score = 140 bits (154), Expect = 2e-28 Identities = 182/250 (73%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | || |||||||| || || ||||| || ||||||||||| | Sbjct 409 CCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCA--G 352 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | ||||||||||| || |||||| | ||||| | |||||| || || Sbjct 351 ATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTG 292 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| ||||| ||| || | || || | || |||||||| | || | Sbjct 291 GGATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAA 232 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187 | ||||||||||| || ||||| || | ||| ||||| || ||||||||||||| |||| Sbjct 231 CATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATATTTGTTATAA 172 Query 15188 ATTTTTTAAT 15197 | | ||| || Sbjct 171 AATATTTTAT 162 >seq108602 Length=371 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | || ||||| || ||||| |||||||| ||||| ||||| Sbjct 121 CCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGAT 180 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||||||||||||||| ||||| | || | | ||||||||| |||| Sbjct 181 AGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGA 240 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || || || ||| || | || ||| | || || || || | ||| || Sbjct 241 ATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACA 300 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| |||||||| || || ||||| || ||||| || ||||| Sbjct 301 TCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 347 >seq19544 Length=280 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || |||| | ||| | || |||||||| || || || || || || |||||||| | | Sbjct 50 CCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGAT 109 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| | ||||||||||| || || || | ||||| | ||||| || ||| Sbjct 110 AAGG-TTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGG 168 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || |||||||| || ||| || | |||||| | || ||||||||| | ||| || Sbjct 169 GATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGAC 228 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 ||| | ||||||||| || || |||| || |||||||| || ||||||||| Sbjct 229 GTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCATATTT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356916564996320