Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq42898 89.7 5e-13 >seq42898 Length=225 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 136718 AATGTATTGTGTGCCTTTTAAGTGAAGTTGTTCATCACGCGCAATAAATTTCATGATCTT 136777 ||| | ||| || || ||||||| | | |||||||||||| || || || || ||||| Sbjct 3 AATATGTTGAGTACCGGTTAAGTGTAATGCTTCATCACGCGCTATTAACTTAATTATCTT 62 Query 136778 CGCGTTACCTTCCAGTAAACCACGTTCGGCAAAGCTGAAAGTACATGCAAAGGACACATA 136837 ||| || ||||| || || | ||||| ||||| |||| ||| |||||| ||||| Sbjct 63 CGCATTGCCTTCAAGCAATTCGCGTTCAGCAAAAGCAAAAGAACAAGCAAAGCTAACATA 122 Query 136838 AAAACGAATTGCTTCCAGTGCGTTGAC 136864 ||| || || ||||| || || || || Sbjct 123 AAATCGGATGGCTTCAAGCGCATTAAC 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531683180341760