Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq81249 138 3e-28 seq101358 113 1e-20 >seq81249 Length=935 Score = 138 bits (152), Expect = 3e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 8902 ATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATG 8961 ||||| || || ||||||| ||| || |||| ||| || ||||| ||||| | | Sbjct 592 ATCGCACTATCACAGCTTAGTCGTAATCTAGAGAGTCGACCCAACAAACGGCCTATTAAT 533 Query 8962 TCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTAC 9021 || ||| |||| || || |||||||| |||||||||||||| || || |||||||||| Sbjct 532 TCTGATTTGCGTGAATCTGGTGCGATTGAGCAGGATGCCGATGTTATTGTCTTTATCTAT 473 Query 9022 CGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCG 9081 || ||||| || || ||| || || || ||| || | |||||||| ||||| | Sbjct 472 CGAGATGAAGTGTACAACGAAGAAAGTGCTGATAAGGGAATTGCCGAAATAATCATCGGT 413 Query 9082 AAGCAGCGAAACGGGCCGATTGGCACCGTACGGCTCGCATT 9122 |||||| ||||||| || || |||||| | ||| ||||| Sbjct 412 AAGCAGAGAAACGGTCCCATAGGCACCTGTCAGCTAGCATT 372 >seq101358 Length=430 Score = 113 bits (124), Expect = 1e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8905 GCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCC 8964 || || || ||||| || || || | ||| | || || | || || || |||||| Sbjct 4 GCACTTTCACAGCTCAACCGTGGCTTAGAGCAGCGGCCTGATAAACGACCTGTCATGAGT 63 Query 8965 GATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGC 9024 ||| ||||||| || || || || ||||| |||||||| |||| | |||||||| || Sbjct 64 GATTTGCGCGAATCTGGCGCAATTGAGCAAGATGCCGATTTGATTTTATTTATCTATCGA 123 Query 9025 GATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAG 9084 |||||||| ||||||||||| |||| |||| || || || ||||| || | | || Sbjct 124 GATGAGGTTTATAACCCCGATAGCGAAGATAAAGGCACCGCAGAAATTATTGTCGGTAAA 183 Query 9085 CAGCGAAACGGGCCGATTGG 9104 || || ||||| || ||||| Sbjct 184 CAACGTAACGGTCCAATTGG 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127380277944192