Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq61629 86.0 8e-12 seq59452 84.2 3e-11 >seq61629 Length=3641 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 31291 GCGGAGAGGGTGGGATTCGAACCCACGG-AGGCTTTCAC-CTCGCTAGTTTTCAAGACTA 31348 || ||| ||||||||||||||||||||| | ||| |||| | ||| ||||||||||| Sbjct 3310 GCAGAGGGGGTGGGATTCGAACCCACGGTACGCTCTCACGCACGCCGGTTTTCAAGACCG 3251 Query 31349 GAGCCTTCAACCACTCGACCACCTCTCCA 31377 | |||||||||| |||| ||||| ||||| Sbjct 3250 GTGCCTTCAACCGCTCGGCCACCCCTCCA 3222 >seq59452 Length=8744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 31291 GCGGAGAGGGTGGGATTCGAACCCACGGAGG-CTTTCA--CCTCGCTAGTTTTCAAGACT 31347 ||||||||||||||||| ||||||||| ||| || | | ||| ||| ||||||||||| Sbjct 7435 GCGGAGAGGGTGGGATTTGAACCCACGAAGGGCTATTAACCCTTGCTGGTTTTCAAGACC 7376 Query 31348 AGAGCCTTCAACCACTCGACCACCTCTCCA 31377 || || |||| || ||| ||||||||||| Sbjct 7375 AGTGCATTCAGCCGCTCTGCCACCTCTCCA 7346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621275972922880