Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq59922 134 2e-26 seq64137 105 8e-18 seq75063 102 1e-16 seq89378 84.2 3e-11 >seq59922 Length=6033 Score = 134 bits (148), Expect = 2e-26 Identities = 915/1456 (63%), Gaps = 31/1456 (2%) Strand=Plus/Minus Query 115843 AGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA 115902 ||||| | || | |||||| || || | | |||||||| | | ||||| | Sbjct 3185 AGATCTTTCAATAAGTGCTTGTTAACGATGATGAACTCACCTGACAACACACGTCTTGTA 3126 Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | || ||||| || || || || ||||| || | |||||| ||||| || Sbjct 3125 TAGATGTTTGAAGTATATGGTTCGAAACATTCGTTGTTTCCAAGGATTTGAGCTGTTGAA 3066 Query 115963 GCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC 116021 ||||| ||||| ||||||| | | || | ||| || | ||| | || | | | | Sbjct 3065 GCTGTTGGCATTGGTGCCAATAACAATGA-GTTACGCACACCGTGCTCCATCACTTCTGC 3007 Query 116022 CTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAG 116081 || | ||||||| || | || ||| | | ||||||||| || |||| Sbjct 3006 TTTCAATACGTCCCATTCCCATCTGCTTGTTGGAGTAACATTCCACATATCGAATTGGAA 2947 Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 116141 ||||| || |||||||||| ||| | | | ||||| || ||||| | || || Sbjct 2946 TTGACCTTTTGAAACTGGCGATCCTTCATAAGATTGGTATGGTCCATCAACTTTAGCTAA 2887 Query 116142 TTCGG-AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 || || | || | | |||| ||||||||| ||||||| |||| || Sbjct 2886 ATCTTTAGATGCAGTC-ATTGAAGCGTAATACATTGTTTCAAAAACTTCTCTGTTCAATG 2828 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 | | || || || || ||||| | | | || || || |||| || | |||| Sbjct 2827 CTCTTGCTTCTTCTGATTCAAATGGCAATCCCATTAAGATGAAAGCATCTGCTAACCCTT 2768 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 116320 | ||||| | |||||||| || || | ||| ||||| ||| ||| || || || | Sbjct 2767 GAACACCTAATCCAATTGGACGGTGACGCATGTTAGAGTTTTTAGCTTCTTCAACTGGGT 2708 Query 116321 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 116380 | || || | ||| || | |||| | || || | | || | || | Sbjct 2707 AGAAGTTACCATCAATGATTTTATTCAAGTTCAATGTCGCTTGGTACGTTACCTCGAACA 2648 Query 116381 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 116440 || |||| ||| || | | || ||| | ||||| ||||| | || | || | Sbjct 2647 ATTTGTCGTGATCGAATTTCCCT---TCATCAGTAACATATTTAGGCAATGCTAAAGAAG 2591 Query 116441 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 116500 ||| ||||| || | |||||| |||||||||||||||| || ||||| || | Sbjct 2590 CCAAGTTACAAACTGCAACCTCATCTGGCGCAGTGTACTCTATAATCTCAGTACATAAGT 2531 Query 116501 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 116560 ||||| |||||| || || ||||| | ||| ||||| |||| ||| ||||| |||| Sbjct 2530 TTGAAGACTTAATTGTACCTAAGTTTTGTTGGTTTGATTTTGAGTTTGCAGCATCTTTGT 2471 Query 116561 AGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT-TGAGAATAGCCTT---CCATACA 116616 | | ||| || || || || ||||| |||| || | | ||| | || ||| | Sbjct 2470 ACAACATGTAAGGAGTACCTGTCTCAATTTGAGATTCTAAGATT----TTGAACCAAAGG 2415 Query 116617 TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCC 116676 || ||| | || | || ||| | | |||||||| ||||| | || Sbjct 2414 TCTTGTGCTTTGATTGTTTTTCTTCCTTTCCCTGCTTTTTCGTACTTCGTGTACAACGCT 2355 Query 116677 TCAAACTCTTCAC---CCACAGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAG 116732 || || || ||| |||| ||||| || ||||| || || | ||||| | | Sbjct 2354 TCGAATTCAGCACTGTGCACA---TCTGAAAGACCTGG-GCATTCGTGCGGACACATTAA 2299 Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 || ||| | ||| || | || || | |||||| | ||||| | ||| | || | Sbjct 2298 AGTCCACTCTCCATTTTCTTTCACACGTTGCATGAATAAATCTGGAACCCACAAAGCGTA 2239 Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 || | ||| | | ||||| | || ||||| ||| || || ||||| Sbjct 2238 AAATAAATCTCTTGCTCTTTGCTCTTCTTTACCGTGATTTTTCTTCAAGTCTAAGAAGTC 2179 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACC 116909 | | ||| || ||||| || |||| ||||| |||| || || || || | || Sbjct 2178 AAATACATCAGCATGCCAAGGCTCCAAGTACATTGCGAAAGAACCTTTACGTTTTCCTCC 2119 Query 116910 AGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATC 116969 | | || | ||| || || || || |||||||||| | | |||||||| |||||| | Sbjct 2118 ACCTTGATCTACGTATCTAGCAGTATCGTTAAATACTCTTAACATTGGAACGATACCGTT 2059 Query 116970 AGATTGGCCATTTG-TCCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 ||| || |||| ||| || || || || || | || | || | ||| || | Sbjct 2058 AGAAGCACCGTTTGTTCCTTTGATGTATGA-ACCTG-TCGCACGGATGTTGTGCATAGCC 2001 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 | ||||| || || || | | ||||| || || || | | | || | || || Sbjct 2000 AATCCAATTCCACCAGCTGATTGAGAGATCTGAGCACATTGTTTTAATGTGTCATAAATT 1941 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || || || |||| ||| | ||||| || ||||||||||| |||| Sbjct 1940 CCTTCAATACTATCTTCCTTCATTGTTAAAAGGAAACAAGATGACATTTGTGGTTTTGGC 1881 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCG 117207 || |||| ||| || | |||||||| ||||| ||||| |||| ||||| | | Sbjct 1880 GTTCCAGAGTTAAACAACGTTGGTGTTGCGTGTGTGAACCATCCTTCTGACATTAAGTTG 1821 Query 117208 TAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAAC 117267 || |||| | ||||| || |||| |||||| || | || || ||||| ||| Sbjct 1820 TATGTCTTAATTGCAGAGTCGATATCTTTTTTGTGAATTCCAACAGAAACACGCATCAAC 1761 Query 117268 ATGTATTG-GGGTGTT 117282 || | ||| ||| ||| Sbjct 1760 ATTTGTTGTGGGCGTT 1745 >seq64137 Length=2701 Score = 105 bits (116), Expect = 8e-18 Identities = 249/373 (67%), Gaps = 5/373 (1%) Strand=Plus/Minus Query 116246 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 116305 |||| || || ||||| ||||||| |||| || | || ||| | ||| || | | || Sbjct 1694 CATCAGCAAGCCCTTGCACACCGATTCCAACAGGTCTATTTCTAAAATTTGAATATTCAG 1635 Query 116306 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 116365 | || ||||| || || |||| ||||| || || | || || || | | | Sbjct 1634 CTTCAGGAACTGGATAGAAGTTATTATCAATAACTCTGTTCAAGTTCTTTGTAATGATCA 1575 Query 116366 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAG 116425 | || | |||||| ||| ||||||| ||||| | | | ||||| || || || | Sbjct 1574 TAGTAACTTCATGTAGCCTTTCGTAGTCAAAGGTACCA---TCTTCTAATACGTATTTTG 1518 Query 116426 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 116485 | | | ||||| || || ||||| |||| | ||| |||||||||||||| || | Sbjct 1517 GCAATGAAATTGAGGCGAGGTTACATACAGCTACTTGATCTTTATCAGTGTACTCCATGA 1458 Query 116486 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 116545 | || || | ||||||||||| || || || | |||| || || || ||| | Sbjct 1457 TCTCACAGCAGAGGTTTGAACTCTTGATAGTTCCAAGATTCTGCTGGTTAGATTTTCCAT 1398 Query 116546 TA-CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || | |||||| || ||||| ||||| || ||||| | || |||| || || Sbjct 1397 TAGCATG-ATCCTTATACAGCATGTATGGGACTCCAGTCTCTATCTGTGACTCAAGGATG 1339 Query 116605 GCCTTCCATACAT 116617 || ||||||| || Sbjct 1338 GCATTCCATAGAT 1326 >seq75063 Length=1318 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| || | ||||| | ||||| ||||| || || |||||||| ||| | ||| Sbjct 426 CCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTT 485 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||||||||||||| || ||||| || ||||||||||| || || || ||||| || ||| Sbjct 486 TTCAACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAAATTCCTTCTACACAAGCAAAC 545 Query 127658 GCAA 127661 |||| Sbjct 546 GCAA 549 >seq89378 Length=630 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/290 (67%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 |||||||| || || ||||| | | || | || | | ||| |||||| ||||| Sbjct 295 CGATCAAAACGTCCAGGGCGCAACAATGCTTTATCTAACACATCGGGGCGGTTAGTCGCA 236 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || ||||||| ||||| | | || || |||||||| || || ||||||||| Sbjct 235 GCAATGACAATAATGCCTTCATTGCCTTCAAAACCATCCATTTCTACCAGCAGTTGATTG 176 Query 12822 ATGGTTTGTTCACGTTCATCATT--CGCGGGCATA-CCACCCGCACTGCGTTGCTTACCG 12878 | |||||| ||||| |||||||| | | | ||| ||||| ||| | | | ||| Sbjct 175 AGGGTTTGCTCACGCTCATCATTACCACCGCCATGGCCACCACCACGGTGACG---ACCT 119 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGT---TGATTTTCACGGGCAACTTCA 12935 |||||||| || || || || || | || || || || |||| ||| ||| Sbjct 118 ACGGCGTCGATCTCATCGATAAATATAATGCAGGGCGCCTGCTTTTT---GGCTTGCTCA 62 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 || || || || || | ||||| |||||||||||||| || ||||| Sbjct 61 AACATGTCCCGAACCCGGGAAGCACCCACACCCACAAACATTTCTACAAA 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612670130776320