Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq97248 109 1e-18 seq44811 102 2e-16 seq14831 98.7 2e-15 >seq97248 Length=461 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | || ||||| ||||| || || | |||||| |||| || || ||| Sbjct 400 AGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGATAATGTTCTT 341 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| | |||||||| |||||||| | | ||| || || || || |||||| Sbjct 340 CCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGGATGCCTTCT 281 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| ||| ||| || | || |||| | || ||||| || || Sbjct 280 TTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACATCTAAGGTA 221 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || | ||| || || || ||||| Sbjct 220 ATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTG 186 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| |||||||| || ||||||||||| || || | ||||||||| | |||||| Sbjct 312 ATCTTCGCTGGAAAGCAATTAGAAGATGGAAGAACATTATCTGATTACAACATTCAGAAA 371 Query 200998 GAGTCTACTCTTCA 201011 ||||| |||||||| Sbjct 372 GAGTCCACTCTTCA 385 >seq44811 Length=222 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | ||||||||| || ||||| || | ||||||||| | | ||| Sbjct 52 TCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGAGT 111 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || ||||||| |||||||| || ||||| || | || || || || |||||| Sbjct 112 TCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATTCC 171 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| ||||||||||| ||| ||| || | ||| |||| Sbjct 172 TTCTTTGTCCTGAATCTTAGTCTTAACGTTGTCAATGGTATCTG 215 >seq14831 Length=294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||||||||||| ||| ||||| ||||||| |||||||| || || || ||||| Sbjct 152 TCTAAGGACAAGGTGGATAGTAGACTCTTTTTGGATATTGTAGTCTGCTAAGGTTCTTCC 93 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| || ||||| || ||||| || | ||| ||||| ||| || |||||| Sbjct 92 ATCTTCAAGGCATTTTCCTGCAAAGATCAGTCTCTGTTGGTCTGGAGGGATGCCTTCTTT 33 Query 199534 CTCCTGAATCTT 199545 || ||||| || Sbjct 32 GTCTTGAATTTT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177272866353184