Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq63133 84.2 3e-11 seq50397 84.2 3e-11 >seq63133 Length=2994 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 189962 CTGGTGCGGATGGTCGGACTCGAACCGACACGCCTAT-GGCGCTAGAACCTAAATCTAGT 190020 ||||||||||| | ||| ||||||| ||||||| |||||| ||||||||||| ||| Sbjct 247 CTGGTGCGGATAGAGGGAGTCGAACCCCCACGCCTTGCGGCGCTGGAACCTAAATCCAGT 188 Query 190021 GCGTCTGCCAATTTCGCCACATCCGC 190046 |||||| ||| || ||||| |||||| Sbjct 187 GCGTCTACCAGTTCCGCCATATCCGC 162 >seq50397 Length=207 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| |||||| ||| |||||||| ||||| | ||||||||||| | |||||||||| Sbjct 100 TGGTGAGCCGTGTTGGGTTCGAACCAACGACCTACTGATTAAAAGTCAGTTGCTCTACCA 41 Query 191922 ACTAAGCTAACGGC 191935 ||| |||||||||| Sbjct 40 ACTGAGCTAACGGC 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 719746236533760