Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq59922 143 3e-29 seq64137 136 5e-27 seq59600 86.0 7e-12 >seq59922 Length=6033 Score = 143 bits (158), Expect = 3e-29 Identities = 1132/1795 (63%), Gaps = 58/1795 (3%) Strand=Plus/Minus Query 109368 CTCTAAACTAAATTGGATTGGTCGA-GCTTTCGCCTTCGAGCGAAGATAATACATACCCG 109426 || |||||| ||||| || || | ||||||| |||| ||| |||||||| |||| Sbjct 3505 CTGTAAACTTAATTGCATCCGTTGCTGCTTTCG--TTCGC---AAG-TAATACATTCCCG 3452 Query 109427 TTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGA-AAGTGTCGGA 109485 |||| | || | |||| |||| | ||||| || | ||||| |||| | | | Sbjct 3451 TTTTCAATCCTTTTTCCCATCCGTAGAAGTGCATAGACGTCAGTTTCCCGAAGTTT-GCA 3393 Query 109486 CTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCC 109545 | ||||| || | |||| || ||||| ||| ||| | || | ||| || || Sbjct 3392 TTTTCCATGAAAATATTCAATGATTGAGATTGACAAATGTAAGCCCCTCTATCCGCAGCT 3333 Query 109546 ATGTCGATGATACACTTTTGGCTAATT-TCCCAGACAGTCTTGTACAAATTCTTGATATC 109604 ||||| || | ||||| || || | ||||| | || ||||| | || ||| | || Sbjct 3332 TGATCGATAAT-CGCTTTTTGCGAAATCTCCCATGCTGTTTTGTAAAGAT-CTTTAAGTC 3275 Query 109605 ATCG-GGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCA 109663 | | |||| || | |||||||| ||||| || ||| ||| || | | || Sbjct 3274 GTTGTGGAACGTTATCTATGTTTTGGATAGATCCGTTAGCTGTCATAATCATACGACGCA 3215 Query 109664 TCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACG 109722 | ||||| ||| | || | || ||||| | ||| ||| |||||||| || | | Sbjct 3214 TTTCTTTGTTCCACAATCCTTCTTTAACTAGATCTTTCAATAAG-TGCTTGTTAACGATG 3156 Query 109723 ACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACAC 109782 | || ||||| | | |||| |||||||| | || || ||||||||||| Sbjct 3155 ATGAACTCACCTGACAACACACGTCTTGTATAGATGTTTGAAGTATATGGTTCGAAACAT 3096 Query 109783 TCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC-ATGAGAA-GAC 109840 || ||||| || |||||||| || || |||||||| ||||| || ||| || | || || Sbjct 3095 TCGTTGTTTCCAAGGATTTGAGCTGTTGAAGCTGTTGGCATTGGTGCCAATAACAATGA- 3037 Query 109841 TGTTTCGGAGACCCTTCGTCTTTAC--CCGCTCACGCATTGCGTCCCAATCATAACGACC 109898 ||| || | ||| | | | | || | ||| || | ||||||| || | | Sbjct 3036 -GTTACGCACACCGTGCTCCATCACTTCTGCT--TTCAATACGTCCCATTC---CCATCT 2983 Query 109899 ACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGA 109958 || | ||| | ||| ||||||||| ||| | | ||| | | | | || || Sbjct 2982 GCTTGTTGGAGT---AACATTCCACATATCGAATTGGAATTGACCTTTTGAAACTGGCGA 2926 Query 109959 ACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC---GGATGAAGCCTCTAG 110015 || | || | ||| | || ||||| | || || || |||| || | | Sbjct 2925 TCCTTCATAAGATTGGTATGGTCCATCAACTTTAGCTAAATCTTTAGATGCAGTC---AT 2869 Query 110016 TGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTC 110075 || || | |||||| || ||||||| | |||| | | ||||| | || Sbjct 2868 TGAAGCGTAATACATTGTTTCAAAAACTTCTCTGTTCAATGCTCTTGCTTCTTCTGATTC 2809 Query 110076 GAA-GGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGG 110134 || || || ||| ||| || || |||| |||| || |||||||| | ||||| | Sbjct 2808 AAATGGCAATCCCATTAAG-ATGAAAGCATCTGCTAACCCTTGAACACCTAATCCAATTG 2750 Query 110135 GGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGA 110194 | || || |||||||||| | ||| ||| || ||||| ||||| | || |||| Sbjct 2749 GACGGTGACGCATGTTAGAGTTTTTAGCTTCTTCAACTGGGTAGAAGTTACCATCAATGA 2690 Query 110195 CCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACG 110254 ||| | ||| ||| | | ||| | || | |||||||| |||||| Sbjct 2689 TTTTATTCAAGTTCAATGTCGCTTGGTACGTTACCTCGAACAATTTGTCGTGATCGAA-- 2632 Query 110255 TTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAG 110314 |||| || | | | |||||||| || | || | ||| || | || || || | | Sbjct 2631 -TTTCCCTTCATCAGTAACATATTTAGGCAATGCTAAAGAAGCCAAGTTACAAACTGCAA 2573 Query 110315 TCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACAC 110374 ||| ||| | ||||| || | ||| || ||||| ||||| ||| |||||| || Sbjct 2572 CCTCATCTGGCGCAGTGTACTCTATAATCTCAGTACATAAGTTTGAAGACTTAATTGTAC 2513 Query 110375 CCAAGTTCTTCTGATTCGATTTGGAG-TTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 | ||||| | || || ||||| ||| ||||| ||||| || || | |||||| || ||| Sbjct 2512 CTAAGTTTTGTTGGTTTGATTTTGAGTTTGCA-GCATCTTTGTACAACATGTAAGGAGTA 2454 Query 110434 CCAGTTTCCGTCTGTGACT-TGAGAATGGCCTT---CCATACATCGGCGGCGGGGACAGT 110489 || || || | || || | | ||| | || ||| | || || || || Sbjct 2453 CCTGTCTCAATTTGAGATTCTAAGATT----TTGAACCAAAGGTCTTGTGCTTTGATTGT 2398 Query 110490 TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA 110549 | | | ||| | | |||||||| |||||||| | || ||||| | || Sbjct 2397 TTTTCTTCCTTTCCCTGCTTTTTCGTACTTCGTGTACAACGCTTCGAATTCAGCACTGTG 2338 Query 110550 CACATCAGAAAGACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCT 110608 |||||| |||||| ||| || || || ||||| | | | ||| | |||| || | Sbjct 2337 CACATCTGAAAGA-CCTGGGCATTCGTGCGGACACATTAAAGTCCACTCTCCATTTTCTT 2279 Query 110609 CAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAG 110668 || | | |||||| | || |||| ||||| || | || | || | | Sbjct 2278 TCACACGTTGCATGAATAAATCTGGAACCCACAAAGCGTAAAATAAATCTCTTGCTCTTT 2219 Query 110669 CCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATG 110728 |||||| | ||| || || | || || ||||| | | ||| | ||||| | Sbjct 2218 GCTCTTCTTTACCGTGATTTTTCTTCAAGTCTAAGAAGTCAAATACATCAGCATGCCAAG 2159 Query 110729 GTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTG 110785 | || | || | |||| || || ||||| | || | || | || || | | Sbjct 2158 GCTCCAAGTACATTGCGAAAGAACCTTTACGTTTTCCTCCACCTTGATCTACGTATCTAG 2099 Query 110786 CTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCC 110845 | || | || || || || | ||| |||| || || | || ||| ||||| || Sbjct 2098 CAGTATCGTTAAATACTCTTAACATTGGAACGATACCGTTAGAAGCACCGTTTGTTCCTT 2039 Query 110846 TAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCAC 110904 | || | || || | | ||||| |||| ||| ||| || ||||| ||||| || | Sbjct 2038 TGATGTATGAACCT-GTCGCACGGATGTTGTGCATAGCCAATCCAATTCCACCAGCTGAT 1980 Query 110905 TTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTG 110964 | | || || ||||| | | | | ||| ||||||| || ||||| |||| |||| Sbjct 1979 TGAGAGATCTGAGCACATTGTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCCTTC 1920 Query 110965 TTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTA 111024 | | | || || ||||| ||||| || || |||||||| | || || | || Sbjct 1919 ATTGTTAAAAGGAAACAAGATGACATTTGTGGTTTTGGCGTTCCAGAGTTAAACAACGTT 1860 Query 111025 GGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGT 111084 ||||| || || ||||| |||| ||||| ||||||||| | | ||| ||| Sbjct 1859 GGTGTTGCGTGTGTGAACCATCCTTCTGACATTAAGTTGTATGTCTTAATTGCAGAGTCG 1800 Query 111085 ACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTG-AGGCGTT 111138 | |||||| |||||| |||| | ||| ||||| ||||| | ||| |||||| Sbjct 1799 ATATCTTTTTTGTGAATTCCAACAGAAACACGCATCAACATTTGTTGTGGGCGTT 1745 >seq64137 Length=2701 Score = 136 bits (150), Expect = 5e-27 Identities = 546/846 (65%), Gaps = 18/846 (2%) Strand=Plus/Minus Query 110206 TTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCC 110265 ||||| || | || | || | |||||| || | ||||| || || || | ||| | Sbjct 1590 TTCTTTGTAATGATCATAGTAACTTCATGTAGCCTTTCGTAGTCAAAGGTAC-CATCTTC 1532 Query 110266 TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 | || || ||||| || | | ||| || || || || || |||| | ||||| Sbjct 1531 TAAT--ACGTATTTTGGCAATGAAATTGAGGCGAGGTTACATACAGCTACTTGATCTTTA 1474 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAG-TTCTT 110384 || ||||| |||| || || || | ||| |||||||| || | ||||| |||| Sbjct 1473 TCAGTGTACTCCATGATCTCACAGCAGAGGTTTGAACTCTTGAT-AGTTCCAAGATTCTG 1415 Query 110385 CTGATTCGATTTGGAGTT-GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 ||| || ||||| || ||||| ||||||||| |||||||||||| ||||| || Sbjct 1414 CTGGTTAGATTTTCCATTAGCATG-ATCCTTATACAGCATGTATGGGACTCCAGTCTCTA 1356 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGAC 110503 ||||||||| || ||||| ||||||| || || |||||| | | | Sbjct 1355 TCTGTGACTCAAGGATGGCATTCCATAGATGTTGTGCCTTGACAGTCTTTCTTCCTTTTC 1296 Query 110504 CTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGAC 110563 |||| ||| || || || | || |||||||| | ||| | || ||| | Sbjct 1295 CTTCAGTCTCATATTTCTCATAGAGTTCTTCAAATTCTTTTCCCCAAGTTTC-GAACAAT 1237 Query 110564 CCTTCGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATG 110622 || || | ||||||||||| | ||| | | || | | || || ||| ||||| Sbjct 1236 TGGGGGCATTCATTTGGACAGAAGAGTGTCCAGTCTTCATCAGCTTCTACTCTCCTCATG 1177 Query 110623 AACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATC---A 110679 || | ||| || ||||| || |||| ||||| | | || |||||| | Sbjct 1176 AATATATCACTAACCCACAAAGCGTAGAAGAGGTCTCTTGCTCT---CTGTTCATCTTTA 1120 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| | | | | ||||| ||||| | |||||||||||||| ||| Sbjct 1119 CCATGGTTCTTCCTCAAGTTAAGGAAGTCATAAATATCTGGATGCCATGGTTCGAGGTAG 1060 Query 110740 ACAGCGATGGATCCCTTACGACGACC--CGCCT-GGTTAACATAGCGTGCTGTGGCATTG 110796 | ||||| | |||||| | ||| | ||| ||| |||||| | ||| ||| ||||| Sbjct 1059 ATAGCGAAAGCTCCCTTTCTCTTACCGCCTCCTTGGTCAACATATCTTGCAGTGTCATTG 1000 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856 |||||||| ||||| || | || ||||| || ||||| ||||| || || || ||| Sbjct 999 AAGACCCTAAGCATTGGGACAAGTCCATTTGAGTGACCGTTTGTTCCTCTGATGTAGGAA 940 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGT 110916 | | | | ||| ||| | | || ||||| || || || |||| || Sbjct 939 GAAGTTGATCTAATACAGTGAACAGCCAATCCAATTCCTCCAGCATTCTTAGAGATAATA 880 Query 110917 GCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGA 110976 ||||| | | | ||| | |||| || ||||| ||||| || | || | || | Sbjct 879 GCACATTGTTGTAATGTTTCGAAAATTCCTTCAATTGAATCATCCCGCATTGCTAATAAA 820 Query 110977 AAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 ||||| ||| ||| || || || || || ||||| ||||| || ||||| || || Sbjct 819 AAGCATGAACTCATTTGTGGTTTTGGGGTACCAGCATTAAAGAGGGTTGGTGTGGCGTGT 760 Query 111037 ATGAAC 111042 ||||| Sbjct 759 GTGAAC 754 >seq59600 Length=7473 Score = 86.0 bits (94), Expect = 7e-12 Identities = 218/327 (67%), Gaps = 20/327 (6%) Strand=Plus/Minus Query 11551 CGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCT 11607 ||||| |||||||| || || | ||| || || || || || |||||||| ||| Sbjct 3658 CGGTTAGTAGCGGCGATCACGATAATACCT---TCGCTGCCTTCAAAGCCGTCCATCTCT 3602 Query 11608 GTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGGGC--ATACCACCTGCC 11664 | | ||| || | ||||| |||||||| ||||| | | ||||| || | Sbjct 3601 ACTAACAACTGATTCAAGGTCTGCTCACGCTCGTCGTTACCACCACCGATACCGGCTCC- 3543 Query 11665 GAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA 11724 ||| | || || || ||||| |||||||| || | |||||| |||| | Sbjct 3542 --ACGATGACGGCCTACCGCATCAATTTCATCGATAAAAATGATACA----TGGTGCACT 3489 Query 11725 CGT----GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTC 11780 | | ||||| ||||| | || ||||| ||| || || |||||||| ||||| || Sbjct 3488 CTTCTTAGCCTGCTCGAACATGTCTCGTACGCGCGATGCGCCGACACCTACAAACATTTC 3429 Query 11781 AACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCG 11840 |||||||| || | |||| || ||| || || || | |||||| || || || Sbjct 3428 AACGAAGTCTGAGCCAGAGATAGAAAAGAACGGCACTTTTGCCTCACCGGCAATAGCCTT 3369 Query 11841 AGCGAGGAGAGTCTTACCCGTACCAGG 11867 ||| | ||||||||||| ||||| || Sbjct 3368 AGCCAAAAGAGTCTTACCTGTACCTGG 3342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588172401145600