Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq75063 113 5e-20 seq89378 93.3 5e-14 seq10218 93.3 5e-14 >seq75063 Length=1318 Score = 113 bits (124), Expect = 5e-20 Identities = 141/193 (73%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 |||||||||| || || | ||||| ||||| || ||||||||||| ||| | ||| Sbjct 426 CCCTCATCTCTTGAGATCAACTCATTAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTT 485 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 |||||||| |||| ||||| || ||||| |||||||| || || || ||||| |||||| Sbjct 486 TTCAACCAGAAAATTGCGCAAAAAGACCCAGAGAAGAAAATTCCTTCTACACAAGCAAAC 545 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 |||| | | || || || ||| | || | | || |||||| | ||||| | Sbjct 546 GCAATCAATCTTTCAGCAAATGAGTCA---TTCTTATTAATCCATTTAAAAGCCCAGTCA 602 Query 117472 GCCTTCTTCTCAA 117484 |||||||||| || Sbjct 603 GCCTTCTTCTTAA 615 >seq89378 Length=630 Score = 93.3 bits (102), Expect = 5e-14 Identities = 201/295 (68%), Gaps = 18/295 (6%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| || || || || | | || | ||| | | ||| ||| || ||||| Sbjct 295 CGATCAAAACGTCCAGGGCGCAACAATGCTTTATCTAACACATCGGGGCGGTTAGTCGCA 236 Query 9252 GCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGG 9308 || ||||||| ||| ||| ||||| |||||||||||||| ||| || ||||| Sbjct 235 GCAATGACAATAATGCCT---TCATTGCCTTCAAAACCATCCATTTCTACCAGCAGTTGA 179 Query 9309 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCAT-ACCACCAGCACTGCGTTGCTTT 9365 || | ||||| || || |||||||| | | | ||| |||||| || || || Sbjct 178 TTGAGGGTTTGCTCACGCTCATCATTACCACCGCCATGGCCACCACCA---CGGTGACGA 122 Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGG---TTGATTTTCGCGGGCGATT 9422 || ||||| || |||||||| || || | ||| || || || |||| ||| Sbjct 121 CCTACGGCGTCGATCTCATCGATAAATATAATGCAGGGCGCCTGCTTTT---TGGCTTGC 65 Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9477 ||||| | || ||||||| || |||||||| |||||||| || ||||||| Sbjct 64 TCAAACATGTCCCGAACCCGGGAAGCACCCACACCCACAAACATTTCTACAAAGT 10 >seq10218 Length=314 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 9424 ||| || ||||||||||||||||| |||| ||| |||||| ||||| || |||| Sbjct 41 TCCAACCGCATCAATCTCATCAATAAAGATAATGCATGGTGAATTTTTCTTCGCAGTTTC 100 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 ||| | || || || | || || ||||||||||||||||| ||||| | || | Sbjct 101 AAACATGTCACGTACACGAGATGCACCAACACCAACAAACATCTCAACAAAATCTGAACC 160 Query 9485 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9543 ||| || | | ||| || || || | |||||| ||||| || || || | | || | Sbjct 161 AGAA-ATAGTAAAGAATGGAACCTTGGCTTCACCAGCAATTGCGCGCGCCAATAATGTTT 219 Query 9544 TACCCGTACCTGG 9556 |||| |||||||| Sbjct 220 TACCTGTACCTGG 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589175830196480