Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq82597 89.7 8e-13 seq78207 89.7 8e-13 >seq82597 Length=872 Score = 89.7 bits (98), Expect = 8e-13 Identities = 77/93 (83%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 115160 AGGAGAAGTGGATGAGCGGCTTAAATCGCTCCCCTGCTAAGGGAGTAAAC--CGGAAG-G 115216 |||||| |||| |||||||| || ||||||||||||||||||||| || | ||| | Sbjct 220 AGGAGACGTGGCCGAGCGGCTGAAGGCGCTCCCCTGCTAAGGGAGTATACGTCAAAAGCG 279 Query 115217 TTTCGAGAGTTCGAATCTCTCCTTCTCCGCCAA 115249 | ||||| ||||||||| |||| |||||||||| Sbjct 280 TATCGAGGGTTCGAATCCCTCCGTCTCCGCCAA 312 >seq78207 Length=1114 Score = 89.7 bits (98), Expect = 8e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 113819 TGGGGGATTAGCTCAGTTGGAATGAGCGACTGGTTTGCAACCAGTAGGTCATCGGTTCGA 113878 |||||||||||||||| ||| | |||| ||| ||||||| ||| ||||| |||||||| Sbjct 875 TGGGGGATTAGCTCAGCTGGGA-GAGCACCTGCTTTGCAAGCAGGGGGTCAACGGTTCGA 817 Query 113879 CCCCGATATCCTCCACCAATTTTA 113902 |||| |||||||||||||| ||| Sbjct 816 TCCCGTTATCCTCCACCAATATTA 793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751577946010880