Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq95498 129 4e-25 >seq95498 Length=505 Score = 129 bits (142), Expect = 4e-25 Identities = 180/250 (72%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 46150 TGCATACATGGACGTAAGCAACCCTT-TGAGAACTCTCCCGGATTCCAGAAGGTTAGAAT 46208 |||||||| || | ||| || ||| | ||| || || |||||||| | || |||| || Sbjct 503 TGCATACAAGGCCTTAAACAGCCCATATGA-AATTCCCCCGGATTATAAAAACTTAGTAT 445 Query 46209 TTCCCCACGATCATCAATGCCCTTTTTCAGATTATGATAAATCTTGGCTAGTTGGTCAAA 46268 ||| |||||||||||||||| || ||| |||| || || | |||||| | Sbjct 444 TTCTGCACGATCATCAATGCCTTTACTCAAGTTATCTACTATTTTCTGCAATTGGTCTAT 385 Query 46269 CATAAGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGACTCGTCCCATATC 46328 | ||||| | |||| ||| ||| ||||||| |||||| || ||||||||||| Sbjct 384 TGTGCCGCCATCAGGTTTAGCCCAAGCACGACCTTGAATACCATAAACCCGTCCCATATC 325 Query 46329 ATCCTCACCTTTACGGTATGGATTGTCTAGCCAAGCTGAGTTTTCATTTGCATTAGCATT 46388 |||||||||||||||||| | ||| | ||||| | ||| ||| ||||| |||| Sbjct 324 ATCCTCACCTTTACGGTAAGCATTATTGAGCCATACATCATTTAAATTAGCATTCGCATC 265 Query 46389 CCATGTGTTA 46398 |||||| ||| Sbjct 264 CCATGTTTTA 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378094754334464