Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq59669 93.3 5e-14 >seq59669 Length=7052 Score = 93.3 bits (102), Expect = 5e-14 Identities = 184/271 (68%), Gaps = 11/271 (4%) Strand=Plus/Minus Query 145196 TACCCCGCAGCACCAGACTCCGAATACGGGTGGGAAAAACTCTTCAGCGAGCGGTTGTAT 145255 ||||| || || || || || || || ||||||||||||| |||||| |||||| Sbjct 6765 TACCCTGCCGCCCCTGATAGTGACTATGGCTGGGAAAAACTCTATGCCGAGCGTTTGTAT 6706 Query 145256 CTCGCTTATAATCGGAA----TCACGGCATTCCTGTTAGGATTGCTCGCTACCACAATAT 145311 || || | | | || || | | || || || || ||||| | |||||||| Sbjct 6705 CTTGCGCACGTTAGAAATAGTTCGCTGGATGCC----AGAATCGCTCGATTTCACAATAT 6650 Query 145312 CTTCGGACCAGAAGGAACCTGGGAAGGTGGAAGAGAAAAAGCACCAGCTGCAATCTGCCG 145371 || || ||| || | ||||| ||||| |||||||| ||| || || || ||| | Sbjct 6649 TTTTGGGCCACTGGGCGCGTGGGATAATGGAAAAGAAAAAGTACCGGCGGCTATTTGCAG 6590 Query 145372 CAAAGTCGCTTACCTCCCAACAGAGGGTGGTGCTATTGAAGTGTGGGGTGATGGAGAACA 145431 ||||| || | |||||||||| || ||||||| || ||||| || || |||| Sbjct 6589 AAAAGTTGC---ACAAGCAACAGAGGGCGGCTCTATTGATGTTTGGGGCGACGGTAAACA 6533 Query 145432 GACAAGATCCTTCCTGTATATCGATGAATGC 145462 ||| |||| ||| | | ||| || || ||| Sbjct 6532 AACACGATCTTTCTTATTTATTGAAGATTGC 6502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609563974606080