Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq59785 145 9e-30 seq61999 138 1e-27 seq70615 105 8e-18 seq55198 96.9 4e-15 seq85497 93.3 5e-14 seq60385 86.0 7e-12 >seq59785 Length=6524 Score = 145 bits (160), Expect = 9e-30 Identities = 346/518 (67%), Gaps = 10/518 (2%) Strand=Plus/Plus Query 154614 GATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA 154673 ||| | || || ||||||| ||||| || || ||||||||||||||||| || || ||| Sbjct 2187 GATGCCATGTCGCTACAACCAAACGCTGGTTCTCAGGGTGAGTATGCAGGCCTATTGGCA 2246 Query 154674 ATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAG 154733 ||| | |||||||| || ||| || | | | || | ||| | || ||| Sbjct 2247 ATCAAGGCATACCACGAATCTAGAGGCGACACTGCACGTGATATTTGTCTTATCCCAAGT 2306 Query 154734 TCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTC 154793 || || || || || || || || ||||| ||||| ||||| ||||||| ||| Sbjct 2307 TCTGCGCACGGCACCAACCCGGCGAGTGCGCAGATGGCGAATATGAAGGTTGTAGTAGTC 2366 Query 154794 AAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGC---AA--TCA 154848 |||||||| || || || ||||| | |||| ||| | ||| ||| || ||| Sbjct 2367 AAGTGTGACGAGCGAGGCAATGTAGACCTACAAGACCTACA-AAGTAAGATCGAAGCTCA 2425 Query 154849 TGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTG 154908 | || | | | | | |||||||| || ||||| || || |||||||| |||| Sbjct 2426 CCCAGCCA---GCATCGCCGCG-ATTATGATCACCTACCCGTCGACCCATGGTGTTTTTG 2481 Query 154909 AAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTG 154968 | | ||| || | ||| || | || |||| | ||| || || || ||| | | Sbjct 2482 AGGAAGATGTTACCAAGGTTTGTGAGCTGGTGCATGGCGCTGGGGGCCAAGTCTATATAG 2541 Query 154969 ATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATG 155028 |||| || || | ||||| || || |||| |||| || ||| |||| || | Sbjct 2542 ATGGTGCTAACTTGAATGCCTTAGTTGGCGTAGCTCAACCGGGTAAGTTCGGTGGCGACG 2601 Query 155029 TATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCG 155088 | | ||| |||| | ||||||||||| |||||||||||||| || || || || |||| Sbjct 2602 TCTCACATTTAAATCTGCATAAAACATTTTGTATTCCACATGGTGGAGGCGGCCCAGGCG 2661 Query 155089 TAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 | || || || || || | || || || |||| ||| Sbjct 2662 TTGGCCCAATCGGAGTTGGTAAGCACCTTGCACCGTTT 2699 >seq61999 Length=3424 Score = 138 bits (152), Expect = 1e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 153253 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 153312 |||| |||||||||||||||| |||||| || |||||||||| |||||||| ||||| | Sbjct 2884 GAAATGTTCTTGAGAATCCTAATTGGTATACCCCTTACACTCCATATCAAGCAGAGATCT 2825 Query 153313 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGAT 153372 |||| |||||||| || |||| | |||||||||||| | || || | ||||| | Sbjct 2824 CTCAAGGAAGATTAGAGAGTTTACTAAATTACCAAACGATGATTTGTGACTTAACAGGCT 2765 Query 153373 TACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || ||||| ||||| || || | |||||||| || || | |||||||| ||| Sbjct 2764 TAGATATAGCTAACGCTTCCTTACTTGATGAAGCTACAGCTGGTGCAGAAGCTATG 2709 Score = 132 bits (146), Expect = 6e-26 Identities = 189/260 (73%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 153733 GTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGAT 153792 ||||| |||| |||||||| | ||| | ||||| ||||| |||| ||||| | Sbjct 2404 GTGAGATGGGAGCAGATATTGCATTCGGTCTAACTCAAAGATTTGGAGTTCCAATGGGCT 2345 Query 153793 ATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGA-TACCT 153851 |||||| || ||||| || ||||| ||| ||| | ||| ||| | | ||| | ||| Sbjct 2344 TTGGAGGACCACATGCAGCTTTCTTCGCAGTCACAAATAAGATTAA-ATATAGAATGCCT 2286 Query 153852 GGCAGAATTGTAGGTCAGTCAGTAGATA-GTGAA-GGTAATAAAGCATACAGATTAGCAC 153909 || ||| | | || |||||||| | | || | || |||||||||| ||| | ||| Sbjct 2285 GGAAGAGTAATCGG--AGTCAGTAAAGATGTACATGGAAATAAAGCATTAAGAATGGCAA 2228 Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969 | |||||||||||||||||||| || ||||| | ||| || || || |||||||||| Sbjct 2227 TGCAGACTAGAGAGCAGCATATTAGAAGAGATAGAGCTACTTCCAATATTTGCACAGCTC 2168 Query 153970 AGGCACTGCTGGCTAATATG 153989 | ||||| | ||||||||| Sbjct 2167 AAGCACTTTTAGCTAATATG 2148 Score = 131 bits (144), Expect = 2e-25 Identities = 476/727 (65%), Gaps = 16/727 (2%) Strand=Plus/Minus Query 154380 GAAACTGACATGATGAGATATATCTACGAGTTATGC-TCTAAAGAT-TTCTCATTAGTAA 154437 ||||| || ||| ||||||||||| | || || || ||| ||| || | | | || Sbjct 1718 GAAACAGATATGCTGAGATATATCCA-GACTTTAGCAGATAAGGATATTGGCTTAACCAA 1660 Query 154438 ATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGC 154497 || ||| ||||| | || ||| || |||||| | ||||| || | ||| | || | Sbjct 1659 AT-CCATGATTCCATTAGGATCTTGTACCATGAAACTTAATGCTGCTGTTGAAATGATCC 1601 Query 154498 CTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATA-CAGACCATG 154556 | ||||| ||| || |||| || | |||||| | ||||| | | | || || Sbjct 1600 CAGTGTCTTGGCCTGAATTTGGAAATATTCATCCATTTGCACCT-TCACACCAAACTGAA 1542 Query 154557 GGTTATCAGAAAATTATAGATG-ACTTACAGAAATGGTTATGTGATATCACAGGGTTTGA 154615 ||||| | |||| || |||| |||| | || ||||| | ||||| || || || Sbjct 1541 GGTTACAAACAAATGATCGATGAACTTTCTGATTACCTTATG-AAGATCACCGGATTCGA 1483 Query 154616 TTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAAT 154675 |||| || | |||||||| ||| | || || |||||||| ||||| || | || Sbjct 1482 AGCTATCTCTATCCAACCTAATAGTGGAGCTCAAGGAGAGTATGCCGGACTTCTAACTAT 1423 Query 154676 CCAAGCATACCATCA-AGGATCA--GGAGATGATAAAAGAAATGTATGTTTGATACCAGA 154732 || | | | ||| | | || || || | | | |||||| | ||||| || ||| | Sbjct 1422 --TAG-AAATCTTCACAAGGCCAATGGTGAAGGTCATAGAAATATCTGTTTAATTCCAAA 1366 Query 154733 GTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGT 154792 ||||| ||||| ||||| ||||| || | | || |||||| | ||| || Sbjct 1365 ATCAGCTCATGGTACTAACCCTGCATCAGCAATGCTTTGTGGAATGAAAATCGTACCGGT 1306 Query 154793 CAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAA 154852 | | ||||| |||| || | || | ||||||| | ||||| | | | | Sbjct 1305 AGATTCAGATGAAAATGGAAATGTTGATGTTGAAGATCTTAAAGCTAAAGCCTTGAAGCA 1246 Query 154853 TACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAAC 154912 || | | | || || |||| |||||| || |||||||| || || || || |||||| Sbjct 1245 TAAAGATAATCTTTCTTGTACTATGATCACTTACCCATCCACTCACGGAGTCTTTGAAGA 1186 Query 154913 TAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGG 154972 || ||| | | || | | | | ||| | |||||||| || ||| ||||||| Sbjct 1185 AAAGATTTTAGAAATTACTGAAACTATCCATAAAAATGGTGGAAGAGTTTATATTGATGG 1126 Query 154973 AGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTA-TGGTGCAGATGTAT 155031 || ||| | || ||| | | || | | || || | | ||| | |||||| | Sbjct 1125 TGCTAATATGAACGCAATGATGGGTC-ACACTTCCCCTGCAAAAATTGGGGGAGATGTGT 1067 Query 155032 GTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAG 155091 ||||| | |||||||| ||||| ||| ||||||||||||||||| ||||| || | | Sbjct 1066 GTCATTTGAACTTACACAAAACTTTCACAATTCCACATGGAGGTGGTGGTCCAGGAATGG 1007 Query 155092 GTCCTAT 155098 | ||||| Sbjct 1006 GGCCTAT 1000 >seq70615 Length=1703 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 153205 TTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTG 153264 |||| |||| |||||| ||| ||| ||| ||| |||| || | |||| || | | Sbjct 1401 TTATTGGTCTTGGATACAATGAAACGATTGTTCCCTCAGTAATTTTGAGAAATGTATTGG 1342 Query 153265 AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGAT 153324 | || || | ||||| || |||| || || || ||||||||||| ||||| ||| | | Sbjct 1341 AAAACCCAGGATGGTATACTGCTTATACGCCGTACCAAGCTGAGATTTCTCAAGGACGTT 1282 Query 153325 TGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTT-ACAGGATTACCAATAGCA 153383 | ||||| | || |||| |||||| | | || |||| || ||| | | || Sbjct 1281 TAGAAGCGCTTTTGAATTTCCAAACAATGGT-ACTTGACTTAACCGGAATGGAGTTGGCC 1223 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 ||||| ||| |||| |||||||||||||| ||| | ||||||||| Sbjct 1222 AACGCCTCTTTATTGGATGAAGCAACTGCTGCATCTGAAGCAATG 1178 >seq55198 Length=204 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 154881 ACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTT 154940 || || || || || |||||||| |||||| ||||| | | || | || || Sbjct 203 ACCTATCCCTCAACCCATGGTGTGTTTGAAGAGGGCATTACCGAAGTCTGCGACATTATT 144 Query 154941 CATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTA 155000 || | ||||||||||||| ||| | ||||| || || || ||||| ||| || ||| Sbjct 143 CACCAGCATGGTGGTCAGGTGTATATCGATGGCGCCAACCTCAATGCCATGGTGGGGCTA 84 Query 155001 GCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGT 155060 | ||| | ||| ||||| || || | |||||| || ||||| |||||||||||| Sbjct 83 TGTCAGCCAGGCAAGTTTGGTGGTGACGTTTCTCATCTGAATTTACACAAAACATTCTGT 24 Query 155061 ATTCCACATGGAGGTGGAGGTCC 155083 ||||| || || ||||| || || Sbjct 23 ATTCCTCACGGTGGTGGTGGCCC 1 >seq85497 Length=751 Score = 93.3 bits (102), Expect = 5e-14 Identities = 332/511 (65%), Gaps = 10/511 (2%) Strand=Plus/Minus Query 154599 GATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTAT 154658 || ||||| |||||||| | | || | || ||||| || || ||||||| | Sbjct 544 GAAATCACCGGGTTTGAAGCGGTCTCCCTCATGCCAAACGCTGGGAGCCAAGGTGAGTTT 485 Query 154659 GCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCA-GGAGATGATAAAAGAAATGT 154717 || || || | || ||| |||||||||| |||| |||| || ||| | | | | Sbjct 484 GCCGGGTTGCTCGCGATCAAAGCATACCA-CAAGAATCAAGGCGATACCCAGCGGACAAT 426 Query 154718 ATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGAT 154777 |||||||| || ||| || || || || |||||||| || || | || ||| | Sbjct 425 CTGTTTGATTCCGGAGAGTGCGCACGGCACGAATCCTGCATCAGCAATCGTTGCGGGGCT 366 Query 154778 GAAAGTTGTAGGTGTCAAGTGTGA-TGATGATGGTAACATAGACATCAAAGATCTAGAGA 154836 ||||| || | || ||| |||| ||| | ||| ||| || || || || || Sbjct 365 CAAAGTAGTCGCGGTGAAG-GTGAATGAAGCTGGCGCCATCGAAATTAATGACCTTCGTG 307 Query 154837 AGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACAC 154896 ||| ||| | | ||| ||| || | ||||| || |||||||| || Sbjct 306 CGAAGGCAGAAAAGCATAAGAATGAGCTCGCTGCGGCGATGATCACCTACCCATCGACCT 247 Query 154897 ATGGTGTATTTGAAACTAACATTAGACA-GATATGTAAGAT--CGTTCATGACAATGGTG 154953 ||| || ||||| | ||| || | || ||| ||| ||| ||||| |||| Sbjct 246 GTGGCGTGTTTGA---TGACAATATCCGTGAGATGATTGATGCCGTCCATGAGTTCGGTG 190 Query 154954 GTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTG 155013 | ||| |||||||| || || || | || || ||||| ||| || ||| ||| Sbjct 189 GATTGGTGTATCTTGACGGCGCGAACATGAACGCGCAGGTTGGATTATGTCGACCTGGTG 130 Query 155014 AGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAG 155073 | || || || ||||| |||||| | || | || ||||||||||| || || || || | Sbjct 129 ATTACGGCGCGGATGTCTGTCATTTGAATCTGCACAAAACATTCTGCATCCCGCACGGCG 70 Query 155074 GTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 | || |||||||| || || || || || || Sbjct 69 GAGGTGGTCCTGGTGTTGGACCGATCGGAGT 39 >seq60385 Length=4838 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 153207 ATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAG 153266 || || ||||||||||| || || | ||||| || | ||| ||||| ||| |||| || Sbjct 2411 ATCGGACAAGGATACTACGGCACGGTGACACCGCCTGCCATCCAGCGCAACATTCTGGAA 2352 Query 153267 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 153326 |||||| ||||||||| | || || || || || |||| || || || | || Sbjct 2351 AATCCTGCTTGGTACACGGCGTATACGCCGTACCAGCCTGAAATTAGCCAAGGCCGCTTA 2292 Query 153327 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAAC 153386 |||||||| |||||| ||||| | || || ||||| || | | || || Sbjct 2291 GAAGCTTTGCTCAATTTTCAAACCATGATTTGCGACCTTACCGGCCTTGATGTGGCCAAT 2232 Query 153387 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || | | ||||||| || |||||||| ||||| ||| Sbjct 2231 GCTTCATTGCTTGATGAAGGCACAGCAGCAGCCGAAGCGATG 2190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578422522055680