Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq61999 174 2e-38 seq60385 170 2e-37 seq59785 127 2e-24 seq70615 102 1e-16 seq55198 96.9 4e-15 seq67029 93.3 5e-14 >seq61999 Length=3424 Score = 174 bits (192), Expect = 2e-38 Identities = 489/734 (67%), Gaps = 15/734 (2%) Strand=Plus/Minus Query 159055 GAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGAT-TTCTCATTAGTAAA 159113 || || || ||| ||||||||||| | |||||| || ||| || | | | ||| Sbjct 1718 GAAACAGATATGCTGAGATATATCCAGACTTTAGCAGATAAGGATATTGGCTTAACCAAA 1659 Query 159114 TGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTGATGCC 159173 | ||| ||||| | || |||||| |||||||| || || || ||| |||| || Sbjct 1658 TCC-ATGATTCCATTAGGATCTTGTACCATGAAACTTAATGCTGCTGTTGAAATGATCCC 1600 Query 159174 TGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATAC-AGACCATGG 159232 ||||| ||| || |||| || | |||||| | ||||| | | || | || | Sbjct 1599 AGTGTCTTGGCCTGAATTTGGAAATATTCATCCATTTGCACCT-TCACACCAAACTGAAG 1541 Query 159233 GTTATCAAAAAATTATAGATGA-CTTACAGAAATGGTTATGTGATATCACAGGGTTTGAT 159291 |||| || |||| || ||||| ||| | || ||||| | ||||| || || || Sbjct 1540 GTTACAAACAAATGATCGATGAACTTTCTGATTACCTTATGA-AGATCACCGGATTCGAA 1482 Query 159292 TCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATC 159351 |||| || | |||||||| ||| | || || |||||||| ||||| || | || Sbjct 1481 GCTATCTCTATCCAACCTAATAGTGGAGCTCAAGGAGAGTATGCCGGACTTCTAACTATT 1422 Query 159352 C--AAGCATACCATCAAGGATCA-GGAGATGATAAAAGAAATGTATGTTTGATACCAGAG 159408 || | | || ||||| | || || | | | |||||| | ||||| || ||| | Sbjct 1421 AGAAATCTT--CA-CAAGGCCAATGGTGAAGGTCATAGAAATATCTGTTTAATTCCAAAA 1365 Query 159409 TCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTC 159468 ||||| ||||| ||||| |||||||||||| || | || |||||| | ||| || Sbjct 1364 TCAGCTCATGGTACTAACCCTGCATCAGCAATGCTTTGTGGAATGAAAATCGTACCGGTA 1305 Query 159469 AAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAAT 159528 | | ||||| |||| || | || | ||||||| | ||||| | | | || Sbjct 1304 GATTCAGATGAAAATGGAAATGTTGATGTTGAAGATCTTAAAGCTAAAGCCTTGAAGCAT 1245 Query 159529 ACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACA 159588 | | | | || || |||| |||||| || || ||||| || || || || |||||| | Sbjct 1244 AAAGATAATCTTTCTTGTACTATGATCACTTACCCATCCACTCACGGAGTCTTTGAAGAA 1185 Query 159589 AACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGT 159648 || || | | || | | | | | ||| | |||||||| || ||| |||||||| Sbjct 1184 AAGATTTTAGAAATTACTGAAACTATCCATAAAAATGGTGGAAGAGTTTATATTGATGGT 1125 Query 159649 GCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTA-TGGTGCAGATGTATG 159707 || ||| | || ||| | | |||| | || || | | ||| | |||||| || Sbjct 1124 GCTAATATGAACGCAATGATGGGTC-ACACTTCCCCTGCAAAAATTGGGGGAGATGTGTG 1066 Query 159708 TCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGG 159767 |||| | |||||||| || || ||| ||||||||||||||||| ||||| || | || Sbjct 1065 TCATTTGAACTTACACAAAACTTTCACAATTCCACATGGAGGTGGTGGTCCAGGAATGGG 1006 Query 159768 TCCTAT-TGGTGTA 159780 ||||| || |||| Sbjct 1005 GCCTATCTGTTGTA 992 Score = 132 bits (146), Expect = 6e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 157928 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 157987 |||| |||||||||||||||| |||||| || |||||||||| |||||||| ||||| | Sbjct 2884 GAAATGTTCTTGAGAATCCTAATTGGTATACCCCTTACACTCCATATCAAGCAGAGATCT 2825 Query 157988 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGAC 158047 |||| |||||||| || |||| | |||||||||||| | || || | ||||| Sbjct 2824 CTCAAGGAAGATTAGAGAGTTTACTAAATTACCAAACGATGATTTGTGACTTAACAGGCT 2765 Query 158048 TACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || ||||| ||||| || || | |||||||| || || | |||||||| ||| Sbjct 2764 TAGATATAGCTAACGCTTCCTTACTTGATGAAGCTACAGCTGGTGCAGAAGCTATG 2709 Score = 127 bits (140), Expect = 2e-24 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||||| ||||| |||| ||||| | ||||| || ||||| || ||||| ||| ||| Sbjct 2369 CAAAGATTTGGAGTTCCAATGGGCTTTGGAGGACCACATGCAGCTTTCTTCGCAGTCACA 2310 Query 158503 GACAAGTATAAGAGAAAGA-TACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGCGAA 158559 | ||| ||| | | ||| | ||||| ||| | | || |||||||| ||| | Sbjct 2309 AATAAGATTAA-ATATAGAATGCCTGGAAGAGTAATCGG--AGTCAGTAAAGATGTACAT 2253 Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || |||||||||| ||| | ||| | |||||||||||||||||||| |||||||| | | Sbjct 2252 GGAAATAAAGCATTAAGAATGGCAATGCAGACTAGAGAGCAGCATATTAGAAGAGATAGA 2193 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATG 158664 || || || || |||||||| |||||||| | ||||||||| Sbjct 2192 GCTACTTCCAATATTTGCACAGCTCAAGCACTTTTAGCTAATATG 2148 >seq60385 Length=4838 Score = 170 bits (188), Expect = 2e-37 Identities = 458/690 (66%), Gaps = 14/690 (2%) Strand=Plus/Minus Query 159118 ATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTG 159177 ||| |||| |||||| ||| || |||||||| ||| |||| | ||| |||||||| | Sbjct 1175 ATGATTCCGCTTGGTTCTTGCACCATGAAACTTAACTCAGCTGCGGAAATGATGCCTATA 1116 Query 159178 TCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACCATGGGTTAT 159237 ||||| || ||| | || | ||||| || |||| | |||| || || Sbjct 1115 ACATGGCCTGAATTTTCCAATCTTCATCCCTATGCACCAAGCGAACAGGTTGAAGGCTAC 1056 Query 159238 CAAAAAATTATAGATGA-CTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTAT 159296 | |||| | || ||| | | | | || || || ||||| | ||| | || Sbjct 1055 AATGAAATGCTGACCGATCTTTCTGCCAAG-TTGTGCATGATTACAGGCTATGACGCGAT 997 Query 159297 ATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGC 159356 || | || || ||| | || ||||||| || |||||||| || | |||| | || Sbjct 996 GTCTATGCAGCCAAACTCTGGCGCACAGGGCGAATATGCAGGCCTTCTGACAATTCGTGC 937 Query 159357 ATACCATCAAGGATCAGGAGATGATAAAA---GAAATGTATGTTTGATACCAGAGTCAGC 159413 ||| || | | ||| | | |||| | | ||||||| || | || |||| || || Sbjct 936 ATATCACC---GTTCACGCGGTGATCAGAAGCGAAATGTTTGCCTCATTCCAGTTTCTGC 880 Query 159414 ACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTG 159473 |||||| || || ||||| || || |||||||| ||| ||||||| | | | |||| Sbjct 879 ACATGGCACCAACCCTGCGTCCGCCCAAATGGCAGGCATGGAAGTTGTCGTTATAAAGTC 820 Query 159474 TGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCA-TGAATACAT 159532 || ||| | ||| | || || || ||||| | | ||||||| | || | | Sbjct 819 TGCTGAAAACGGCGATATTGATATTGAAGATTTTCGCCAAAAAGCAAACGCTGCAGGCGA 760 Query 159533 TTGAACTGTCATGTAT-TATGATTACATATCCATCTACACATGGTGTATTTGAAACAAAC 159591 | || | | | || |||||| |||||||| || || |||||||| |||||| |||| Sbjct 759 TCGATTAGCC--GCATGTATGATCACATATCCCTCAACCCATGGTGTTTTTGAAG-AAAC 703 Query 159592 A-TCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGC 159650 | | | | || || | || |||||| ||| || ||||| ||| | |||||||| Sbjct 702 AGTGCGCGATATTTGCGATATCACCCATGAGTTTGGCGGACAGGTCTATTTGGATGGTGC 643 Query 159651 AAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCA 159710 ||| | ||||| ||| ||| | |||||||| |||| ||| | ||||| |||| Sbjct 642 AAACTTGAATGCCATGGTCGGTTTGGCAAAACCGGGTGAAATCGGTTCTGATGTCAGTCA 583 Query 159711 TCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCC 159770 | | || || || || || ||||| ||||| ||||| || || ||||| ||| | || || Sbjct 582 TTTGAATTTGCACAAAACTTTCTGCATTCCGCATGGCGGCGGTGGTCCGGGCATGGGGCC 523 Query 159771 TATTGGTGTAGCAAAACATCTCACACCATT 159800 ||||| || || || || ||||||| Sbjct 522 AATTGGCGTTAAAAGCCACCTTGCACCATT 493 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||||||||| || || | ||||| || | ||| ||||| ||| |||| || Sbjct 2411 ATCGGACAAGGATACTACGGCACGGTGACACCGCCTGCCATCCAGCGCAACATTCTGGAA 2352 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 |||||| ||||||||| | || || || || || |||| || || || | || Sbjct 2351 AATCCTGCTTGGTACACGGCGTATACGCCGTACCAGCCTGAAATTAGCCAAGGCCGCTTA 2292 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 |||||||| |||||| ||||| | || || || || || || | || || Sbjct 2291 GAAGCTTTGCTCAATTTTCAAACCATGATTTGCGACCTTACCGGCCTTGATGTGGCCAAT 2232 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || | | ||||||| || |||||||| ||||| ||| Sbjct 2231 GCTTCATTGCTTGATGAAGGCACAGCAGCAGCCGAAGCGATG 2190 >seq59785 Length=6524 Score = 127 bits (140), Expect = 2e-24 Identities = 342/518 (66%), Gaps = 10/518 (2%) Strand=Plus/Plus Query 159289 GATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA 159348 ||| | || || ||||||| ||||| || || ||||||||||||||||| || || ||| Sbjct 2187 GATGCCATGTCGCTACAACCAAACGCTGGTTCTCAGGGTGAGTATGCAGGCCTATTGGCA 2246 Query 159349 ATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAG 159408 ||| | |||||||| || ||| || | | | || | ||| | || ||| Sbjct 2247 ATCAAGGCATACCACGAATCTAGAGGCGACACTGCACGTGATATTTGTCTTATCCCAAGT 2306 Query 159409 TCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTC 159468 || || || || || || || || || |||||| ||||| ||||||| ||| Sbjct 2307 TCTGCGCACGGCACCAACCCGGCGAGTGCGCAGATGGCGAATATGAAGGTTGTAGTAGTC 2366 Query 159469 AAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGC---AA--TCA 159523 |||||||| || ||||| ||||| | |||| ||| | ||| ||| || ||| Sbjct 2367 AAGTGTGACGAGCGAGGCAATGTAGACCTACAAGACCTACA-AAGTAAGATCGAAGCTCA 2425 Query 159524 TGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTG 159583 | || | | | | | |||||||| || || || || || |||||||| |||| Sbjct 2426 CCCAGCCA---GCATCGCCGCG-ATTATGATCACCTACCCGTCGACCCATGGTGTTTTTG 2481 Query 159584 AAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTG 159643 | | | | | || | ||| || | || |||| ||| || || || ||| | | Sbjct 2482 AGGAAGATGTTACCAAGGTTTGTGAGCTGGTGCATGGCGCTGGGGGCCAAGTCTATATAG 2541 Query 159644 ATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATG 159703 ||||||| || | ||||| || || |||| |||| || | | |||| || | Sbjct 2542 ATGGTGCTAACTTGAATGCCTTAGTTGGCGTAGCTCAACCGGGTAAGTTCGGTGGCGACG 2601 Query 159704 TATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCG 159763 | | ||| |||| | ||||| ||||| |||||||||||||| || || || || |||| Sbjct 2602 TCTCACATTTAAATCTGCATAAAACATTTTGTATTCCACATGGTGGAGGCGGCCCAGGCG 2661 Query 159764 TAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 | || || || || || | || || || |||| ||| Sbjct 2662 TTGGCCCAATCGGAGTTGGTAAGCACCTTGCACCGTTT 2699 >seq70615 Length=1703 Score = 102 bits (112), Expect = 1e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 157880 TTATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTG 157939 |||| |||| |||||| ||| ||| || ||| |||| || | |||| || | | Sbjct 1401 TTATTGGTCTTGGATACAATGAAACGATTGTTCCCTCAGTAATTTTGAGAAATGTATTGG 1342 Query 157940 AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGAT 157999 | || || | ||||| || |||| || || || ||||||||||| ||||| ||| | | Sbjct 1341 AAAACCCAGGATGGTATACTGCTTATACGCCGTACCAAGCTGAGATTTCTCAAGGACGTT 1282 Query 158000 TGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAA 158059 | ||||| | || |||| |||||| | | || | || ||| | | | || | Sbjct 1281 TAGAAGCGCTTTTGAATTTCCAAACAATGGTACTTGACTTAACCGGAATGGAGTTGGCCA 1222 Query 158060 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 |||| ||| |||| |||||||||||||| ||| | ||||||||| Sbjct 1221 ACGCCTCTTTATTGGATGAAGCAACTGCTGCATCTGAAGCAATG 1178 >seq55198 Length=204 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 159556 ACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTT 159615 || ||||| || || |||||||| |||||| ||| | | | || | ||| || Sbjct 203 ACCTATCCCTCAACCCATGGTGTGTTTGAAGAGGGCATTACCGAAGTCTGCGACATTATT 144 Query 159616 CATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTA 159675 || || ||||||||||||| ||| | ||||| || || || ||||| ||| || ||| Sbjct 143 CACCAGCATGGTGGTCAGGTGTATATCGATGGCGCCAACCTCAATGCCATGGTGGGGCTA 84 Query 159676 GCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGT 159735 | ||| | | | ||||| || || | |||||| || ||||| || ||||||||| Sbjct 83 TGTCAGCCAGGCAAGTTTGGTGGTGACGTTTCTCATCTGAATTTACACAAAACATTCTGT 24 Query 159736 ATTCCACATGGAGGTGGAGGTCC 159758 ||||| || || ||||| || || Sbjct 23 ATTCCTCACGGTGGTGGTGGCCC 1 >seq67029 Length=2137 Score = 93.3 bits (102), Expect = 5e-14 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 159550 ATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG 159609 ||| | || ||||||||||| || ||||| | ||| | || | | | || | Sbjct 135 ATGGTAACTTATCCATCTACGCACGGTGTTTACGAAGAAGGAATTAAAGACATCACATCG 194 Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 ||| |||| ||| ||||| || || ||| | || |||||||| | ||||| || || Sbjct 195 ATTATTCACGAGCGCGGTGGACAAGTTTATATGGACGGTGCAAACATGAATGCTCAAGTT 254 Query 159670 GGTCTAGCAAAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAGAC 159728 || || |||| ||| | || ||| || || ||||| ||||| | || ||||| || || Sbjct 255 GGGTTAACAAACCCA-GGGAATATCGGGGCTGATGTTTGTCACTTGAATTTACACAAAAC 313 Query 159729 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACA 159788 || ||||| || |||||||| || || || ||||| || ||||| || ||| ||| Sbjct 314 GTTTGCAATTCCTCACGGAGGTGGTGGGCCAGGAGTAGGACCAATTGGAGTTGCAGCACA 373 Query 159789 TCT 159791 || Sbjct 374 CCT 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587248862942720