Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq50855 89.7 6e-13 seq4898 84.2 2e-11 >seq50855 Length=212 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 22473 TTTGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCG 22532 ||||||| ||||||||||||||||||||| ||| | ||| ||| || |||||||||||| Sbjct 96 TTTGGGGCCTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGGAGTTCG 155 Query 22533 AGTCTCCTATTCTCCAC 22549 | ||||||| |||||| Sbjct 156 ATTCTCCTAGGCTCCAC 172 >seq4898 Length=338 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 22475 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAG 22534 ||||| ||||||||| ||| |||||||||| |||||| ||||| ||||||||||||| Sbjct 22 TGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGATTTGCATTCAGGAGGTCAGGAGTTCGAT 81 Query 22535 TCTCCTATTCTCCACTCAATCCTCTT 22560 |||||| |||||| ||| | |||| Sbjct 82 CCTCCTAGGCTCCAC-CAAGCATCTT 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559843106444800