Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq97248 176 1e-38 seq19544 158 3e-33 seq108602 141 2e-28 seq44811 136 9e-27 seq14831 132 1e-25 seq87644 114 3e-20 seq94139 86.0 1e-11 >seq97248 Length=461 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | ||||||||||||||||| ||||| |||||||| | | || Sbjct 404 TCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGATAATGT 345 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || |||||||| | || ||||| ||||| || ||||| Sbjct 344 TCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGGATGCC 285 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||||||| || ||||||||| ||||| || || || || || || | Sbjct 284 TTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACATCTAA 225 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || || ||||| |||||||| | |||||| Sbjct 224 GGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCAT 183 >seq19544 Length=280 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | |||||||||||||| || || ||||||||||| | | || Sbjct 55 TCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGATAAGGT 114 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| ||||| ||||| | || |||||| ||||| || || || Sbjct 115 TCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATACC 174 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||||||| || ||| || || ||||| || || || ||| || ||||| Sbjct 175 TTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGACGTCAAG 234 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| |||||||| ||||| || ||||| || | ||||| Sbjct 235 GGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCAT 276 >seq108602 Length=371 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | || ||||| || ||||||||||| || ||||| | ||||| Sbjct 126 TCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGT 185 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | || || || || |||||||||| ||||||||||| ||||| || Sbjct 186 TCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCC 245 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||| |||||||| || |||||| || || |||||||| || ||| || || | Sbjct 246 CTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACATCTAA 305 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | || ||||| || | ||| || || || | |||||| Sbjct 306 GGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 348 >seq44811 Length=222 Score = 136 bits (150), Expect = 9e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | ||| ||||| || || || ||||| ||||| |||| ||||| Sbjct 52 TCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGAGT 111 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | ||||| || || |||||||||| |||||| ||||| ||||| || Sbjct 112 TCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATTCC 171 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||||||||| ||||| || ||| ||||| |||||||| || || Sbjct 172 TTCTTTGTCCTGAATCTTAGTCTTAACGTTGTCAATGGTATCTGA 216 >seq14831 Length=294 Score = 132 bits (146), Expect = 1e-25 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | |||||||| | ||| ||||||||||| |||||||| || || | || Sbjct 158 TCTTAATCTAAGGACAAGGTGGATAGTAGACTCTTTTTGGATATTGTAGTCTGCTAAGGT 99 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || || ||||| ||||| |||| |||||||||||||| ||||| Sbjct 98 TCTTCCATCTTCAAGGCATTTTCCTGCAAAGATCAGTCTCTGTTGGTCTGGAGGGATGCC 39 Query 195039 TTCTTTGTCTTGAATTTT 195056 |||||||||||||||||| Sbjct 38 TTCTTTGTCTTGAATTTT 21 >seq87644 Length=678 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | || || ||||| || || ||||| ||||||||||| || | | || Sbjct 371 TCTTAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGATAAGGT 312 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || || ||||| | || |||||| ||||||||||| || Sbjct 311 TCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCC 252 Query 195039 TTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||| Sbjct 251 TTCTTTATCTTGAATTTT 234 >seq94139 Length=510 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/206 (69%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 194939 GAAGA--GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| || ||||||||| |||||||||||| ||| ||||| |||||||| | || Sbjct 139 GAAGATGGTAGACTCTTTTCTAATATTGTAATCTGCAGCTGTTCTTCCATCTTCCAATTG 198 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || | || | | || ||| || | || || ||||| || || |||||||| Sbjct 199 CTTTCCACCAAAAACTAATCTTTGGCTATCAGCTGGGATACCTTCCTTTTCCTGAATTTT 258 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||| ||| ||||| | || ||| || || | || | || || ||||| Sbjct 259 GGCTTTGATGTTATCAATAGATTCGTTGTGTTCAACATCGACTGTGATAGTTTTACCTGT 318 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | ||||||||| || |||||||||| Sbjct 319 TAGAGTTTTTACAAATACTTGCATTT 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107929978887584