Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_015465.1 Length=33004 Score E Sequences producing significant alignments: (Bits) Value seq35979 98.7 2e-16 >seq35979 Length=238 Score = 98.7 bits (108), Expect = 2e-16 Identities = 124/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 22390 TGGCGAATCCACCAGTAGGCATAGGTCGAGAACTTGTAGCCGCGGGATGGGTCGAAGAGC 22449 ||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 233 TGGCGAATCCACCAGGTGGCATAGGTCGAGAACTTGTAGCCGCGGCGGTATTCGAACTTG 174 Query 22450 TCAGTGGCCCGGGCCAGGCCCATGTTGCCATCTTGCACAAGGTCAAGCATCTCAAGGCTT 22509 || |||| |||||| |||||||| || || | |||||| || | || || Sbjct 173 TCCACGGCCTTCATCAGGCCGATGTTGCCTTCCTGGATAAGGTCGAGGAACTGCAG---- 118 Query 22510 GTGCAGCGTTTGACGTATTTCTTTGCAATAGTGACCACCAGGCGGAGGTTG 22560 || ||| ||| ||||||||| || || | || ||| ||||| |||||| Sbjct 117 --GCCGCGGTTGGTGTATTTCTTGGCGATGGAGATCACAAGGCGCAGGTTG 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105354464416384