Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq59922 268 1e-66 seq75063 212 7e-50 seq81092 95.1 1e-14 >seq59922 Length=6033 Score = 268 bits (296), Expect = 1e-66 Identities = 637/955 (67%), Gaps = 22/955 (2%) Strand=Plus/Minus Query 36819 TTCATTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACT 36878 ||| || | ||||||||||| || | || || || || || | | |||| |||| Sbjct 1213 TTCTTTCTCTAAAAATCTTCGTCGATAGTGAAGGTTTGATCTGAATCATTGTTCAAAACT 1154 Query 36879 CCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGAT 36938 || |||||| ||||| ||||||| |||| || || || || || |||| | ||| Sbjct 1153 CCAGCTTTTTGGTATTCACCAACTCTCTTTTCAAAGAAGTTCGTTTTCCCTTGAATTGAA 1094 Query 36939 ATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCC 36998 || ||||||| ||||||||||| || | | || ||| | | ||||||| Sbjct 1093 ATCATTTCCATGAAATCAAATGGGTTTGTCGCGTTGAATACTTTTTCGTTTCCTAATTCC 1034 Query 36999 TTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCA 37058 || | ||||| |||||||| || ||||||| |||| | ||| ||| || || Sbjct 1033 AACAATAATCTATCAGCAACAAACTCAATGTATTGCGACATCAAATCACTGTTCATTCCG 974 Query 37059 ATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTA 37118 |||| || || |||| ||| || ||| |||| ||| || ||| || || || | Sbjct 973 ATTAACTTAACGGGAAGTGCTTCAAGAATAAATTCTTTCTCAATTTCAACTGCGTC---A 917 Query 37119 ACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAA-------ACAA 37171 | ||| | |||| ||| |||| | | | | || || | | || Sbjct 916 AGGATAATTTTCTGAACTGTTTCCTTTGGAAGTT-TATCAACGATGTGGTTGGTGTATAA 858 Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231 ||||||||| |||||||| || || ||||| ||||| || || || ||||| || | Sbjct 857 TAAACATGCGAAATCACAGTGCAATCCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGA 798 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA 37291 | |||||||| | |||||||| || | ||| | |||| ||||| || || || Sbjct 797 AAGCCCTGGCATCAGTCCTCTTTTCTTCAACCAGTAAATTGAACAGAAAGAACCTGAGAA 738 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 |||||| ||||| |||||||||||||| ||||| | | | || ||| | | ||| Sbjct 737 GAAAATTCCTTCCACTGCTGCAAATGCAACAAGTCTTTCTGCAAA---TGATCCTTCATC 681 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 | ||||| | ||||||||| |||| ||||||||||| ||||| ||||| || Sbjct 680 A---ATCCAACGCAAAGCCCAATCTGCTTTTACCTTAACACATTCCATTGTGTCAATAGC 624 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || || | | | | ||| || | | ||| | || |||||||| |||| | ||| Sbjct 623 ATTAAACAAATATTCTTTGTCCTTCGTGTCTTTAATGTAAGTATCTATTAAAAGCGAATA 564 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 | ||||||||||||| ||||||| |||| || || || || ||| | | || |||| Sbjct 563 CGTTTCAGAGTGAATGTTTTCAACTGCTACTTGGAACCCGTAGAAAAATTTTGCCTCAGT 504 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 | ||||| || || || ||| |||||||||||||| || || ||||| || Sbjct 503 ATACTGAACTTCTGACAAGAAATTCTCTGCTAAGTTTTCATTTACAATTCCATCTGATGC 444 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAAT-TTTTT 37648 || || ||||| | |||| ||| | |||||| | ||||| || || | | | | Sbjct 443 CGCGAAAAAAGCCAATACATGTTTAACAAAATGACGTTCATTATCGTTCAGCTTCGTATC 384 Query 37649 CCAATC-ATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATG 37707 |||||| ||||| |||| | ||||| || || | ||||| ||||| || | Sbjct 383 CCAATCAATTAAGTCGGCTTGA-AGATCAATCTCTTCGGCTGTCCAGAAACTAGCTTCGG 325 Query 37708 CACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCT 37762 | ||| || | | |||||| |||| ||||| |||||||||| |||||||| Sbjct 324 CCTTTTTGTAGAAAGCCCAAATGTCATCGTGTTGAATTGGAAATAGAACAAATCT 270 >seq75063 Length=1318 Score = 212 bits (234), Expect = 7e-50 Identities = 561/848 (66%), Gaps = 34/848 (4%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||||||||| || | ||| ||||||||| ||||| || ||||||| Sbjct 101 CATAACCCCTGCTTTTTGATACTCACTTACTTTTCTTTCGAAGAAATTAGTTTTTCCTTG 160 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATA----TATAGTACTAC 36987 ||||| || | ||||| | || ||||||||| || ||| | | | ||||| | Sbjct 161 AAGTGAAATCATGTCCATCCATTCGAATGGATTAACTGCATTGAAGTGCTTTGGTACTCC 220 Query 36988 ATGA-TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCA 37046 | || ||| ||||| ||||| |||||||| || || |||| | ||| |||| Sbjct 221 AAGAGTAAAG-----AGAAGTCTATCAGCAACAAACTCAATATATTGTCCCATAAGTTTG 275 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATT 37106 || |||||||| |||| ||| || | | || | |||| || ||| | Sbjct 276 CTATTCATACCAATAAGTTCTACGGGCAAAGATTCAGATACAAATTCAAGCTCAATTGCT 335 Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTT-CAGTTGGGGGATA---TTTTAA--- 37159 || || || | | || | | ||| ||||| || ||| ||| | |||| Sbjct 336 ACTGCTTCAGTCAAAATTTCA----TAAATTCTTTCATTTG----ATACCTTATTAACCA 387 Query 37160 -ATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATT 37218 || |||| |||| ||||| ||||| ||| |||||| || |||||||| ||||| | Sbjct 388 TATGTTTATACAACAAACAAGCAAAGTCAGTATGTAATCCCTCATCTCTTGAGATCAACT 447 Query 37219 CATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAA 37278 ||||||| || | |||||||| | | ||| ||||| | ||| || ||||| || Sbjct 448 CATTAGAGAAACAAAGGCCTGGCATAAGAGATCTCTTTTTCAACCAGAAAATTGCGCAAA 507 Query 37279 AAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAG 37338 |||| ||||| |||||||| ||||| || ||||| || | | | | | | || Sbjct 508 AAGACCCAGAGAAGAAAATTCCTTCTACACAAGCAAACGCAATCAATCTTTCAGCAAA-- 565 Query 37339 TTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAA 37398 ||| || | | ||||||||| | ||| || ||||| |||||| ||||| Sbjct 566 -TGAGTCATTCTTATTAATCCATTTAAAAGCCCAGTCAGCCTTCTTCTTAACAGTTTCAA 624 Query 37399 TTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAA 37458 | | ||||| || || || || || | |||||||| ||| | ||||||||||||| Sbjct 625 TATTATCAATAGCCTTAAAAAGGAAATCTTTTTCTTTGAGATCACTAATATAAGTATCAA 684 Query 37459 TTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAAC 37518 | || | | || ||||| ||||| ||| || || | || || ||||| || | Sbjct 685 TAAGGAGAGAGTAAGTTTCACTGTGAACATTCTCCATCATACTTTGGAAGCCATAGAAGC 744 Query 37519 ACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG-TTTTCATTAACT 37577 | ||| |||||| | ||| || || | || | || |||| || ||| || Sbjct 745 ATCTAACTTCAGGGATTTGTACTTCAGCAGCGAAGC-ATTCAATAAGATTCTCAAGGACA 803 Query 37578 ATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTT 37637 || |||||| ||| || ||||||||||| || ||||| || || ||||| ||||||| Sbjct 804 ATTCCATCAGAAGCAGCGAAGAAAGCAAGCACGTATTTGATGAAGTGTCTCTCATCATCA 863 Query 37638 GATAATTT---TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAA 37694 |||||| |||||||| || | |||| | ||||| | || ||| | |||| Sbjct 864 TTTAATTTATCATTCCAATCTTTTAAATCTGAAGCCAAATCTATCTCTTCAGCTACCCAA 923 Query 37695 AAACTTGC 37702 || | ||| Sbjct 924 AAGCATGC 931 >seq81092 Length=944 Score = 95.1 bits (104), Expect = 1e-14 Identities = 179/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 78230 TGATGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAA 78289 |||| | ||||||||||||||||| || || ||| | || | ||||| || | ||| | Sbjct 620 TGATATAATTGGAATTGATGAAGGACAGTTCTTTGAAGACCTTGTGGAGTTCTGAGAAGA 561 Query 78290 TATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAA 78349 ||||| |||| |||||| |||||||||| | |||||||| | ||| | | | ||||| Sbjct 560 AATGGCTAATAGAGGAAAGCTTGTTATTGTAGCTGCATTAGACGGTACTTTTGAGAGAAA 501 Query 78350 AACATTTGGTAATATTC-TAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATG 78408 |||| || | | || || | ||||| || | | ||| |||| || ||| ||| Sbjct 500 GCCATTCGG-ACGAGTCTTAGAATTAATCCCGCTCGCGGAATCTGTAACCAAGTTAGATG 442 Query 78409 CTATATGTAAAATATGTTTTAATGATGCTGCATTTACAAAAAGATTATGTGACGATACTA 78468 || | ||| | || | ||| | ||||| |||||| | |||||| || Sbjct 441 CTGTTTGTGTAGACTGCAAACACTCAGCTTCTTTTACTAAAAGACTCTGTGACTCTAAAG 382 Query 78469 AAATTGAACTAATTGGTGGAG 78489 ||| ||||| ||||| |||| Sbjct 381 AAACAGAACTCATTGGAGGAG 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591508642958080