Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq351 120 5e-22 seq38273 113 8e-20 seq104760 87.8 3e-12 >seq351 Length=365 Score = 120 bits (132), Expect = 5e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22951 CGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAA 23010 ||||| || ||||| ||||| ||| | ||||| ||||||||||||| || || || Sbjct 31 CGGTCAGCATAGGATACTTCACACACCTCATCGGATTCAAAGAACAACATCTGAGCCACG 90 Query 23011 CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGC 23070 |||||| |||||| ||| || ||| ||||| ||||| || || | ||| | Sbjct 91 CCTTCGTTAGCGTAAATCTTCGCAGGGAGGCTAGTGGTGTTGGAGAATTCTAAAGTCACA 150 Query 23071 GAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATAC 23130 |||| |||||| || |||| ||||||||| ||||| || ||||| ||||| ||||| Sbjct 151 TGACCTTCCCATTCAGGCTCCAACGGCGTGACATTTACAATAATGCCACAACGAGCATAA 210 Query 23131 GTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGT 23179 || ||||| || | ||| | || || | ||| |||||| ||||| Sbjct 211 GTAGATTTACCCAAGCAAACCGTTAGCACATTACGTGGAATGCGGAAGT 259 >seq38273 Length=231 Score = 113 bits (124), Expect = 8e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 22966 ACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAG 23025 |||||||| | || || |||||||||||||| || || ||| |||||| || ||| Sbjct 65 ACTTCGCAGACCTCGTCGGATTCAAAGAACAGCATCTGGGCGACGCCTTCGTTGGCATAG 124 Query 23026 ATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCT 23085 || |||||| | |||||| |||||||| ||||| || | || | ||| || Sbjct 125 ATTTTTGCCGGCAGGGTTGTGGTGTTGGAAAATTCCAGTGTGACATGACCCTCCCACTCG 184 Query 23086 GGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGT 23132 || |||||||||||||| || ||||| |||||||| |||||||| || Sbjct 185 GGCTCCAGCGGCGTGACATTCACGATAATGCCGCAGCGCGCATAGGT 231 >seq104760 Length=399 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 22986 TTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGT 23045 |||||| || | | || || |||||||| ||| || ||| || || ||||| Sbjct 159 TTCAAAAAATAATACCTGCGCACAACCTTCATTAGCATAAATCTTAGCGGGTAGCGGTGT 100 Query 23046 GGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTT 23105 |||||| ||||| || || | | |||| ||| || ||||| | ||||||||||| Sbjct 99 GGTATTACTGAACTCTAGTGTGACATAACCTTCCCACTCAGGTTCAAATGGCGTGACGTT 40 Query 23106 TACGATGATGCCGCAACGCGCATACGTCGATTTGCC 23141 || |||||||||||||||||||| || || ||||| Sbjct 39 CACAATGATGCCGCAACGCGCATAAGTTGACTTGCC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896368923292160