Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_017975.1 Length=167292 Score E Sequences producing significant alignments: (Bits) Value seq95498 145 8e-30 >seq95498 Length=505 Score = 145 bits (160), Expect = 8e-30 Identities = 224/320 (70%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 97117 ACCATATACATAACCCATATCATCTTCGCCGCGACGAGACTCGTTAGCTAACCACGCTTC 97176 |||||| || ||||||||||| || || ||| | | ||| | ||| | || Sbjct 345 ACCATAAACCCGTCCCATATCATCCTCACCTTTACGGTAAGCATTATTGAGCCATACATC 286 Query 97177 ATTTAAGTTAGCATTAGCATCCCAAGTTTTAGTTCCTAACTTACGGAAGTCTTCTGCGTT 97236 |||||| |||||||| |||||||| |||||||| ||||| ||||| || || | || || Sbjct 285 ATTTAAATTAGCATTCGCATCCCATGTTTTAGTGCCTAATTTACGAAAATCAGCAGCATT 226 Query 97237 AGTGTAACCACGAATGTAACCTAGTAGTTCGGCTACGGCTGCTTTCCAATAACTCTTACG 97296 | |||||||| || || || | | || || | || | ||| || | || ||||| Sbjct 225 ATCATAACCACGGATATATCCCAAAAACTCAGCAATAGCAGATTTAAAAAAGCTTTTACG 166 Query 97297 TGTAGTAAGCATCGGTAGTATACCTGCTTCAACATCATATTCCATGTTAGCACGTATAAC 97356 ||| || | |||||| | | | | |||| | |||||| | | ||| ||||| Sbjct 165 TGTCGTTATCATCGGGAATTCATTTTGGGCAACGTTATATTCTAAATCTGCATTAATAAC 106 Query 97357 AGTTAGGCAACGTTTACCTGTACGTTCATTATATACCCATTCACCTTCTTCTACAATACG 97416 |||| || ||||||||||| |||||||| | ||||| ||||| ||| |||||||| Sbjct 105 CGTTAAACAGCGTTTACCTGTGCGTTCATTCTCAACCCAAGTACCTTGTTCAACAATACG 46 Query 97417 ACGACCTAAGTCTAAATAAG 97436 | | ||| |||||||||| Sbjct 45 TTGGCATAAATCTAAATAAG 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534476164387840