Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq98262 109 2e-19 >seq98262 Length=464 Score = 109 bits (120), Expect = 2e-19 Identities = 211/311 (68%), Gaps = 9/311 (3%) Strand=Plus/Minus Query 25978 ACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGC 26037 |||||||| || | ||||| ||||| || |||||||| || || |||| || | Sbjct 390 ACAATTTCTGTTGAATAGCGGGTTACGCCATCTTTTTCCCATTTACGTGTTTGCAAACGG 331 Query 26038 CCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTG 26097 || || | |||| | |||||| ||||| ||||| || || || || |||| | Sbjct 330 CCTTCTACATAAATCGCGCTACCTTTTTTCAGATACTCACCTGCAATTTCTGCTAAACGG 271 Query 26098 CCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCG 26157 | | ||| ||| | |||||||| || ||||| ||| ||||| | | |||| Sbjct 270 CGATACATCACAATATTGTGCCATTCGGTTTTTTCTTGCTTAACGCCGCTTT---TATCT 214 Query 26158 TTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAA 26217 |||||| ||||||| || || | ||| || ||||||||||||| |||||||| Sbjct 213 TTCCAGTTTTCTGATGTAGCAATACTAAAATTACAAACTGCGCCGCCATCTGGCATGTAG 154 Query 26218 CGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCGTGAT 26277 || | ||||| || || | ||| || || | || |||||||| || |||| Sbjct 153 CGCACTTCTGGGTCACGTCCTAAGTTGCCTACTAATATCACTTTATTGAC------TGAT 100 Query 26278 GCCATTATTTA 26288 ||||||||||| Sbjct 99 GCCATTATTTA 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159610447623232