Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17]
109,152 sequences; 80,407,893 total letters
Query= NC_017984.1
Length=46387
Score E
Sequences producing significant alignments: (Bits) Value
seq101358 118 3e-22
seq81249 95.1 4e-15
>seq101358
Length=430
Score = 118 bits (130), Expect = 3e-22
Identities = 132/174 (76%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 41830 GATAAGCGCCCAATGATGAGTGATTTGCGTGAATCTGGCCAAATCGAACAAGATGCCAAT 41889
||||| || || | |||||||||||||| ||||||||| ||| || ||||||||| ||
Sbjct 43 GATAAACGACCTGTCATGAGTGATTTGCGCGAATCTGGCGCAATTGAGCAAGATGCCGAT 102
Query 41890 ACGATTTTATTTATTTATCGTGATGAGGTTTACAACAAACAAAGTAAAGATATTGGGATT 41949
|||||||||||| ||||| ||||||||||| ||| | || |||||| || |
Sbjct 103 TTGATTTTATTTATCTATCGAGATGAGGTTTATAACCCCGATAGCGAAGATAAAGGCACC 162
Query 41950 GCTGAAATTATTGCAGCTAAAGTCCGTGATGGTGAAGTTGGCACG-GTTCGATT 42002
|| |||||||||| | |||| ||| | ||| | |||| ||| ||||||||
Sbjct 163 GCAGAAATTATTGTCGGTAAACAACGTAACGGTCCAATTGG-ACGCGTTCGATT 215
>seq81249
Length=935
Score = 95.1 bits (104), Expect = 4e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 41769 AGAGTTTGATTGCCCTGTTTTCTGTTTATCGCAGTTAAGCCGAAAGGTTGAGGATAGAGC 41828
||||||| ||||||||||| || |||| ||| | || || || | ||| | || |
Sbjct 611 AGAGTTTAATTGCCCTGTTATCGCACTATCACAGCTTAGTCGTAATCTAGAGAGTCGACC 552
Query 41829 AGATAAGCGCCCAATGATGAGTGATTTGCGTGAATCTGGCCAAATCGAACAAGATGCCAA 41888
| || || || || | |||||||||||||||||| || || || |||||| |
Sbjct 551 CAACAAACGGCCTATTAATTCTGATTTGCGTGAATCTGGTGCGATTGAGCAGGATGCCGA 492
Query 41889 TACGATTTTATTTATTTATCGTGATGAGGTTTACAACAAACAAAGTAAAGATATTGGGAT 41948
| ||| | ||||| ||||| ||||| || |||||| || ||||| |||| || ||
Sbjct 491 TGTTATTGTCTTTATCTATCGAGATGAAGTGTACAACGAAGAAAGTGCTGATAAGGGAAT 432
Query 41949 TGCTGAAATTAT 41960
||| ||||| ||
Sbjct 431 TGCCGAAATAAT 420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148124554730176
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |