Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq98032 95.1 1e-14 seq105709 93.3 4e-14 seq59553 87.8 2e-12 >seq98032 Length=464 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 75945 TGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAACC 76004 |||||||||| | ||||||||||||| | ||| | ||||||||||| | |||||||||| Sbjct 166 TGGTGGGCCTTCGCAGACTTGAACTGCGGACCTGCCGATTATGAGTCGGATGCTCTAACC 225 Query 76005 AATTGAGCTAAAGGCCCaaa 76024 | ||||||||||||||||| Sbjct 226 AGCTGAGCTAAAGGCCCAAA 245 >seq105709 Length=387 Score = 93.3 bits (102), Expect = 4e-14 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 75938 TAAATCT-TGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTG 75996 ||||||| |||||| || ||| || | |||| || ||||||||||||||||||||||| Sbjct 377 TAAATCTGTGGTGGCCCCCCCGTGAGTCGAACACGGCACCAACGGATTATGAGTCCGCTG 318 Query 75997 CTCTAACCAA--TTGAGCTAAAGGCCCaaaaa 76026 |||||||||| ||||||| ||| ||||||| Sbjct 317 CTCTAACCAAGCATGAGCTAGAGGGCCAAAAA 286 >seq59553 Length=7800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 75944 TTGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAAC 76003 |||||||||| || |||| |||| || ||||| ||||||||||||| |||||||||| Sbjct 3028 TTGGTGGGCCCGCCTGGACTCGAACCAGGGACCAATGGATTATGAGTCCACTGCTCTAAC 3087 Query 76004 CAATTGAGCTAAAGGCCC 76021 ||| ||||||| |||||| Sbjct 3088 CAACTGAGCTACAGGCCC 3105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532542805866240