Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq42898 156 3e-33 seq107097 82.4 5e-11 >seq42898 Length=225 Score = 156 bits (172), Expect = 3e-33 Identities = 142/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 73394 CGTAAGCTTAAAGAGCGACTTTATCTTGCCGTTTGTGCTGTCAATGCCTTAGAAGCTATC 73453 ||||| | ||||| || | || |||||||||||| | || ||||| | ||||| ||| Sbjct 188 CGTAAATTAAAAGAACGTTTATACCTTGCCGTTTGTTCAGTTAATGCGCTTGAAGCCATC 129 Query 73454 CGCTTTTACGTAAGTTTCGCATGTTCATTTGCTTTTGCAGAACGTGAGCTACTTGAAGGT 73513 || ||||| || || || || ||||| ||||||||||| ||||| || | |||||||| Sbjct 128 CGATTTTATGTTAGCTTTGCTTGTTCTTTTGCTTTTGCTGAACGCGAATTGCTTGAAGGC 69 Query 73514 AATGCCAAGATTATTAAACTAATCGCCCGTGATGAAGCCTTGCACTTAACTGGTACTCA 73572 ||||| ||||| ||||| |||| || ||||||||||| || |||||||| |||||||| Sbjct 68 AATGCGAAGATAATTAAGTTAATAGCGCGTGATGAAGCATTACACTTAACCGGTACTCA 10 >seq107097 Length=381 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 70711 GAAATAATCATTAAAGCAGCAGCAGATTTAATATCGGTTGACACTCCTGATTATCAGTAT 70770 |||| || || ||||| || || |||||||| || | || || ||||||||||| ||| Sbjct 379 GAAACTATTATCAAAGCTGCTGCTGATTTAATTTCAGAAGAAACACCTGATTATCAATAT 320 Query 70771 CTCTCATCTCGTTTAGCCGTATTTCATTTACGTAAACAAGCCTATGGTGATTTTGTACCA 70830 || || || | | || || || ||| | |||||| |||| |||||| | |||| |||| Sbjct 319 CTATCTGCTAGGCTTGCAGTTTTCCATCTGCGTAAAAAAGCTTATGGTCAATTTGAACCA 260 Query 70831 CCT 70833 ||| Sbjct 259 CCT 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335223861023584