Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq19544 143 2e-29 seq108602 127 2e-24 seq87644 123 2e-23 seq97248 120 2e-22 seq44811 100 2e-16 seq14831 93.3 3e-14 seq94139 82.4 6e-11 >seq19544 Length=280 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | | || |||||||| || || || || || ||||||||||| | Sbjct 48 TTCCTCCTCTAAGTCTAAGTACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAG 107 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||||||| |||||||| ||||| | |||||||| || | Sbjct 108 ATAAGGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTG 167 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| ||||||||||| || |||||| | || | ||| || || ||| | Sbjct 168 GGATACCTTCCTTATCTTGAATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGA 227 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || | || || || || || || |||||||| |||||||| Sbjct 228 CGTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTTACAAAGATCTGCAT 276 >seq108602 Length=371 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||||||||| | | | || ||||| || |||||||||||||| || || ||||| | Sbjct 120 TCCTCCTCTAAGTCTGAGGACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGA 179 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | |||||| | || || ||||| || || ||||| || | | |||||| || || || Sbjct 180 TAGAGTTCTACCGTCTTCTAATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGG 239 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| || |||||||||||||| || || ||| | || | |||||||| ||| || Sbjct 240 AATTCCCTCTTTATCTTGAATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAAC 299 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||||| || || | ||| || ||||| |||||||| Sbjct 300 ATCTAAGGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 347 >seq87644 Length=678 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | | || | |||||||||||||||||| || |||||||| || | Sbjct 376 CCACCTCTTAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGAT 317 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || |||||||| || ||||| || || | |||||||| || ||| Sbjct 316 AAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATTAATCTTTGTTGATCTGGAGGA 257 Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385 || |||||||||||||||||||| Sbjct 256 ATTCCTTCTTTATCTTGAATTTT 234 >seq97248 Length=461 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | | || |||||||| || || ||||| || || |||||||| | Sbjct 411 TTCCTCCTCTGAGTCTAAGGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAG 352 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||||||| || || || ||||| | ||||||||| || | Sbjct 351 ATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTG 292 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||||||||| |||||||| || || || | || | ||| || || || | Sbjct 291 GGATGCCTTCTTTGTCTTGAATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAA 232 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | || || || |||||||| ||||| || || ||||| Sbjct 231 CATCTAAGGTAATTGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCAT 183 >seq44811 Length=222 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | | || || || || |||||||| || || || ||||| |||| Sbjct 45 TTCCTCCTCTAAGTCTGAGGACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGG 104 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || |||||| | || ||||||||||| || ||||| || | | |||||||| || | Sbjct 105 AGAGAGTTCTACCGTCTTCCAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCTGGTG 164 Query 101361 GAATGCCTTCTTTATCTTGAATTTT 101385 |||| |||||||| || ||||| || Sbjct 165 GAATTCCTTCTTTGTCCTGAATCTT 189 >seq14831 Length=294 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||||||||| | | || | || | ||||| |||||||| |||||||| || || Sbjct 164 TCCTCCTCTTAATCTAAGGACAAGGTGGATAGTAGACTCTTTTTGGATATTGTAGTCTGC 105 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||||| |||| || | || |||||||| |||| | |||||| || || || Sbjct 104 TAAGGTTCTTCCATCTTCAAGGCATTTTCCTGCAAAGATCAGTCTCTGTTGGTCTGGAGG 45 Query 101362 AATGCCTTCTTTATCTTGAATTTT 101385 ||||||||||| ||||||||||| Sbjct 44 GATGCCTTCTTTGTCTTGAATTTT 21 >seq94139 Length=510 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAG--GGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||| | | | ||| || |||| |||||| |||||| ||||||||||| | Sbjct 116 CCTCCTCTAATTCTGAGAACCAA--GAAGATGGTAGACTCTTTTCTAATATTGTAATCTG 173 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| ||||||||||| || |||| | || | || ||| | | Sbjct 174 CAGCTGTTCTTCCATCTTCCAATTGCTTTCCACCAAAAACTAATCTTTGGCTATCAGCTG 233 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGT-TTCC 101419 | || ||||| || || |||||||| ||| | | || | || || | || ||| Sbjct 234 GGATACCTTCCTTTTCCTGAATTTTGGCTTTGATGTTATCAATAGATTC-GTTGTGTTCA 292 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||| ||||| || |||| |||||||||||||| ||||| Sbjct 293 ACATCGACTGTGATAGTTTTACCTGTTAGAGTTTTTACAAATACTTGCAT 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395751234807264