Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq19544 102 6e-17 seq97248 93.3 3e-14 seq108602 89.7 4e-13 >seq19544 Length=280 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| ||| || || |||||||||||||||| ||| | || || Sbjct 68 ACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCAGATAAGGTTCTTCCATCTTCT 127 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || ||||| |||| || |||||||| | || | || ||||| || | Sbjct 128 AATTGCTTTCCTGCAAAGATCAATCTTTGTTGATCTGGTGGGATACCTTCCTTATCTTGA 187 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | | || || || || || || | ||||| || ||| Sbjct 188 ATCTTAGTCTTTACATTATCAATAGTATCGGATTGTTCGACGTCAAGGGTAATGGTCTTT 247 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||||||| |||||||| Sbjct 248 CCAGTCAAGGTCTTTACAAAGATCTGCAT 276 >seq97248 Length=461 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| |||||| ||||| ||||||||||||| ||| | || || Sbjct 391 ACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGATAATGTTCTTCCATCTTCT 332 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || || || |||| || ||||||||| | || | ||| || ||||| | Sbjct 331 AATTGCTTTCCAGCGAAGATCAATCTCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGA 272 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | || ||||| ||| || || | ||||| || || Sbjct 271 ATCTTAGTCTTGACGTTGTCAATAGTATCTGATTGCTCAACATCTAAGGTAATTGTCTTA 212 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| Sbjct 211 CCAGTTAAAGTCTTTACGAAGATTTGCAT 183 >seq108602 Length=371 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||||||||||| || ||||| |||||| ||| | |||| || Sbjct 139 ACCAAATGGAGAGTAGATTCTTTTTGAATGTTATAATCTGATAGAGTTCTACCGTCTTCT 198 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || ||||| || |||| |||||| || | |||| ||||| || || | Sbjct 199 AATTGTTTTCCAGCAAAGATAAGTCTCTGTTGGTCTGGTGGAATTCCCTCTTTATCTTGA 258 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || || || || | || || |||||| Sbjct 259 ATCTTAGTCTTGACATTGTCGATGGTGTCAGATTGTTCAACATCTAAGGTGATGGTTTTT 318 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || ||||| |||||||| Sbjct 319 CCAGTAAGAGTCTTAACAAAGATCTGCAT 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380430842520096