Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euplotes_20focardii_20[genbank_20GCA_5F001880345.1_202016-11-17] 109,152 sequences; 80,407,893 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq59854 141 2e-28 seq60379 95.1 3e-14 seq14305 84.2 5e-11 >seq59854 Length=6254 Score = 141 bits (156), Expect = 2e-28 Identities = 271/388 (70%), Gaps = 11/388 (3%) Strand=Plus/Minus Query 150385 AAAGAATGGTGCG--TTA-GTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGG 150441 ||||||| | || ||| || ||||||||||| ||||||||||| || | || || Sbjct 1030 AAAGAATAATCCGCTTTATGTGGGTGAACCAGGCGTTGGTAAAACGGCGATTGCCGAAGG 971 Query 150442 ATTAGCACAACGCATCGCTAATGGTGATGTTCCAGA--TTCTATGAAAGATGTTGAAATT 150499 || ||| ||||||||| | |||| ||||| || || | || || |||||| | |||| Sbjct 970 TTTGGCAAAACGCATCGTTGATGGCGATGTGCCCGAAGTGCT-TG-AAGATGATACAATT 913 Query 150500 CTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAA 150559 | || | ||||||| ||||| | ||| ||||| || |||||||| || ||||| Sbjct 912 TTCTCGCTTGATATGGGCGCATTGATTGCCGGTACGCGCTACCGTGGTGATTTTGAAGAG 853 Query 150560 CGTGT-AGACAATTTGCTACAAGAACTAAAAGAACGCGATGATGTTATTCTGTTCATCGA 150618 ||| | | ||| | | || ||||||| |||| | | || ||||| ||||| Sbjct 852 CGTTTGAAACAGGTCGTTA-AAGAACTGGAAGATTTTCCGGGCGCAATCCTGTTTATCGA 794 Query 150619 TGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAA 150678 ||||||||||| |||| ||||||||||| || || || | ||||| | || Sbjct 793 CGAAATCCATACCGTTATTGGTGCTGGTGCAACATCAGGTGGCGCAATGGATGCGTCTAA 734 Query 150679 TATGTTAAAACCTGCTCTATC-TCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACG 150737 | ||||||||||| || || ||| ||| |||||| ||| ||| | || || ||| Sbjct 733 CCTTTTAAAACCTGCGCTTTCATCG-GGTTCAATTCGCTGCATTGGTTCGACGACATACA 675 Query 150738 ATGAATATCGTAAACACATTGAAAAAGA 150765 | |||| |||||| | | |||||||| Sbjct 674 AGGAATTTCGTAATTTCTTCGAAAAAGA 647 >seq60379 Length=4852 Score = 95.1 bits (104), Expect = 3e-14 Identities = 190/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 133867 AAGAACTATCGACCAGCTTGAAGTACTTATTGATGGATTGAAAAATAATCCTGATTCTCG 133926 || || | |||| ||| ||||| |||| ||||||| | || || ||||| |||| || Sbjct 1745 AACAAGTGTCGATCAGATTGAAAAACTTGTTGATGGTATCAAGAACAATCCGAATTCGCG 1686 Query 133927 ACGTCATATTCTAACTGCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATG 133986 || || ||| | | ||| ||||| || | |||| | ||| ||||||| ||||| Sbjct 1685 CCGCCACATTGTGAGTGCTTGGAACCCTGCTCTGGTAGACGAGATGGCTTTGCCGCCATG 1626 Query 133987 TCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAAGTTATCATGTATTCTATATCAACG 134046 |||||| | ||| || | || ||||| ||| | ||||| || ||||| || Sbjct 1625 TCATTGTCTGTTTCAGTTTTATGTCGCGGACGGCAAGCTTTCATGCCAGCTCTATCAGCG 1566 Query 134047 TAGCTGTGATCTATTCTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCA 134106 | ||| | || ||||| || |||||||| || || || ||| | | || || || Sbjct 1565 TTCGGCGGATATCTTTTTAGGTGTGCCATTCAATATCGCGTCCTATGCGCTTCTTACGCA 1506 Query 134107 TATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTTGT 134148 ||| | ||||| || |||| | || || ||||| || || Sbjct 1505 CATGATTGCACAGGTGTGTGACCTTGAGGTGGGTGATTTCGT 1464 >seq14305 Length=297 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 284183 TATGGGGATGTGGTGAAATTGGCAGACACGCCAGATTTAGGTTCTGGTTCTTC--GGAGT 284240 |||| ||| |||||| |||||| |||||||| ||||||||||||| || | | | || Sbjct 263 TATGCGGACGTGGTGGAATTGGTAGACACGCTAGATTTAGGTTCTAGTGCAGCAATGTGT 204 Query 284241 GCGAGTTCGAGTCTCGCCATCCCCACCATATTT 284273 | ||||||||||||| || ||| |||||| ||| Sbjct 203 GAGAGTTCGAGTCTCTCCGTCCGCACCATTTTT 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1145985483349696